Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.9e-265 918.7 482 100.0
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.4e-260 901.7 482 98.5
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 5.3e-252 874.0 484 94.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 4.1e-244 847.8 469 93.2
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 5.9e-243 844.0 469 93.2
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.9e-243 844.0 469 92.5
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 5.0e-242 840.9 469 93.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.6e-240 835.9 469 91.3
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 4.6e-240 834.3 469 92.3
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 6.1e-240 833.9 470 91.3
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.0e-239 833.2 468 91.5
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 3.0e-239 831.6 469 91.5
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 3.0e-239 831.6 469 92.3
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.9e-239 831.2 469 92.3
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.3e-238 828.2 469 91.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.3e-238 827.8 469 90.8
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 7.4e-238 827.0 469 90.8
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.3e-237 826.2 469 90.8
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.7e-237 824.7 468 91.7
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.4e-236 822.0 469 91.9
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 2.4e-236 822.0 469 90.2
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.1e-236 821.2 469 90.4
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.1e-236 821.2 469 90.4
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.3e-236 820.8 471 90.9
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 9.1e-236 820.1 469 90.2
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.2e-235 819.7 469 90.8
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.0e-235 818.9 469 90.4
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 3.4e-235 818.1 469 90.2
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.9e-234 815.1 469 89.3
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 5.0e-234 814.3 470 88.9
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 6.5e-234 813.9 470 89.8
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.9e-233 812.4 469 90.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 3.2e-233 811.6 469 89.6
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 9.4e-233 810.1 506 84.6
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.2e-232 809.7 469 89.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.6e-232 809.3 469 88.3
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.1e-232 807.4 469 89.6
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 6.1e-232 807.4 470 89.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.8e-231 805.8 506 84.4
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 3.9e-231 804.7 493 86.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 87.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-230 803.1 470 88.7
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.0e-230 802.4 470 87.9
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 2.6e-230 802.0 469 89.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.7e-230 800.8 470 87.7
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 7.4e-230 800.4 470 87.7
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 9.7e-230 800.0 469 89.1
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.3e-229 799.7 469 90.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 3.7e-229 798.1 463 89.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 3.7e-229 798.1 469 88.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.3e-228 794.3 468 87.0
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 7.0e-228 793.9 469 88.7
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.5e-227 792.7 469 88.3
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.6e-227 792.0 468 88.7
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 5.0e-226 787.7 468 88.0
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.6e-224 782.7 449 91.5
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.7e-224 781.9 469 87.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.7e-224 781.9 469 86.8
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.7e-224 781.2 469 86.6
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.0e-223 778.5 469 86.6
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.0e-223 778.5 545 77.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 6.7e-223 777.3 469 85.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.8e-223 776.9 469 85.7
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.0e-222 775.8 469 86.1
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.6e-222 775.4 469 85.9
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.3e-222 775.0 469 85.7
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 9.7e-222 773.5 469 85.7
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 9.7e-222 773.5 469 85.7
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 9.7e-222 773.5 469 85.5
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.7e-221 772.7 469 85.5
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.7e-221 772.7 469 85.5
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.8e-221 771.2 469 85.7
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.8e-220 769.2 469 85.3
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.1e-220 768.1 469 85.7
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.2e-219 766.5 469 85.9
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 4.5e-219 764.6 470 85.5
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 4.5e-219 764.6 470 85.5
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.5e-217 759.6 441 88.9
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 2.5e-217 758.8 471 85.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 3.2e-217 758.4 470 84.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 5.5e-217 757.7 469 83.2
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 2.1e-216 755.7 493 81.5
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 2.1e-216 755.7 497 80.5
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.3e-215 752.3 491 81.5
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 8.8e-215 750.4 469 82.7
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-214 749.2 397 99.2
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.6e-214 748.8 470 84.0
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.1e-212 741.9 492 79.9
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.2e-209 731.9 418 90.9
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.6e-200 703.0 470 81.1
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.6e-200 701.8 418 88.8
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-198 694.1 418 86.8
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-198 694.1 418 86.8
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 6.1e-192 674.5 423 83.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.4e-191 673.3 461 78.5
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.2e-190 670.2 469 73.6
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-190 669.8 469 78.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.7e-189 666.4 383 90.3
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 2.6e-174 615.9 350 90.0
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.7e-173 613.2 340 95.6
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 4.1e-172 608.6 465 68.2
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 5.4e-172 608.2 373 84.5
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 4.7e-168 595.1 374 84.2
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.4e-167 592.8 469 68.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.6e-163 580.1 365 85.5
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.1e-161 573.9 470 62.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 4.0e-159 565.5 324 92.9
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-142 510.4 312 83.0
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 3.9e-138 495.7 365 72.9
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.1e-136 490.0 308 86.4
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.1e-131 473.4 324 80.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.9e-114 416.0 246 89.0
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-91 340.9 312 64.4
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.4e-87 325.9 182 86.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 9.1e-87 325.1 238 74.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-86 324.7 173 91.3
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.0e-81 307.4 302 56.6
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.4e-79 301.2 505 38.0
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.8e-73 278.5 212 60.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.4e-72 275.8 294 54.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-69 268.1 160 90.0
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.3e-60 235.7 140 90.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.1e-59 232.3 407 42.8
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.5e-57 228.0 195 69.2
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 3.2e-55 220.3 119 98.3
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.1e-47 195.3 332 38.0
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.4e-47 194.9 107 85.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-47 193.4 111 92.8
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 7.8e-46 189.1 510 30.8
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.6e-45 186.0 105 80.0
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.1e-43 181.0 111 86.5
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-39 168.7 91 94.5
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.4e-34 151.8 85 91.8
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.8e-32 143.7 76 93.4
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.5e-28 131.7 74 89.2
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.9e-28 131.3 81 85.2
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.1e-27 127.9 72 84.7
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.7e-27 127.1 72 81.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.2e-25 122.1 74 81.1
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.9e-24 117.5 99 66.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-23 114.4 79 75.9
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 9.3e-23 112.5 57 91.2
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 8.7e-21 105.9 57 86.0
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 4.2e-15 87.0 52 86.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 4.6e-14 83.6 55 81.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.0e-13 82.4 52 86.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.9e-13 80.5 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 5.1e-13 80.1 74 59.5
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 4.2e-07 60.5 33 93.9


User provided reference genes

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