Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021879.2 Cucumis melo HOM05D000818 ORTHO05D001324 4.8e-39 164.1 85 100.0
MELO3C022278.2 Cucumis melo HOM05D000818 ORTHO05D001324 9.6e-24 113.2 67 88.1
MELO3C027944.2 Cucumis melo HOM05D000818 ORTHO05D001324 2.8e-23 111.7 61 95.1
ClCG06G002500 Citrullus lanatus HOM05D000818 ORTHO05D001324 3.7e-23 111.3 67 86.6
CsaV3_6G008620 Cucumis sativus L. HOM05D000818 ORTHO05D001324 8.2e-23 110.2 67 85.1
Sed0002445 Sechium edule HOM05D000818 ORTHO05D001324 1.1e-22 109.8 67 83.6
Atru.chr5.128 Acer truncatum HOM05D000818 ORTHO05D001324 2.6e-21 105.1 67 79.1
COL.COLO4_12411 Corchorus olitorius HOM05D000818 ORTHO05D001324 3.4e-21 104.8 67 76.1
Gohir.A11G075400 Gossypium hirsutum HOM05D000818 ORTHO05D001324 4.5e-21 104.4 67 74.6
Gohir.D11G080100 Gossypium hirsutum HOM05D000818 ORTHO05D001324 4.5e-21 104.4 67 74.6
Gorai.007G085700 Gossypium raimondii HOM05D000818 ORTHO05D001324 4.5e-21 104.4 67 74.6
Duzib133G0528 Durio zibethinus HOM05D000818 ORTHO05D001324 1.3e-20 102.8 60 80.0
SGA_v2.0_scaffold153G36903 Striga asiatica HOM05D000818 ORTHO05D001324 1.3e-20 102.8 68 76.5
Sabra14G0034400 Salix brachista HOM05D000818 ORTHO05D001324 1.7e-20 102.4 67 79.1
Haze_02844 Corylus avellana HOM05D000818 ORTHO05D001324 2.2e-20 102.1 66 77.3
AL5G42540 Arabidopsis lyrata HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
AT3G60320 Arabidopsis thaliana HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
BcaB02g08176 Brassica carinata HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
BcaC02g10147 Brassica carinata HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
C04p32320 Brassica napus HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
BolC4t24782H Brassica oleracea HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
THA.LOC104802494 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 2.9e-20 101.7 67 76.1
Thhalv10005793m.g Eutrema salsugineum HOM05D000818 ORTHO05D001324 3.8e-20 101.3 67 74.6
PGR004G0558 Punica granatum HOM05D000818 ORTHO05D001324 3.8e-20 101.3 67 74.6
Sc02g0003090 Simmondsia chinensis HOM05D000818 ORTHO05D001324 3.8e-20 101.3 67 76.1
THA.LOC104817191 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 3.8e-20 101.3 67 77.6
Thecc.01G394700 Theobroma cacao HOM05D000818 ORTHO05D001324 3.8e-20 101.3 67 73.1
CiPaw.13G026400 Carya illinoinensis HOM05D000818 ORTHO05D001324 4.9e-20 100.9 67 74.6
Migut.B01537 Erythranthe guttata HOM05D000818 ORTHO05D001324 4.9e-20 100.9 60 78.3
Potri.014G047400 Populus trichocarpa HOM05D000818 ORTHO05D001324 4.9e-20 100.9 67 79.1
Actinidia12145 Actinidia chinensis HOM05D000818 ORTHO05D001324 6.5e-20 100.5 70 68.6
Ah.05g177850 Amaranthus hybridus HOM05D000818 ORTHO05D001324 6.5e-20 100.5 67 76.1
Duzib138G0248 Durio zibethinus HOM05D000818 ORTHO05D001324 6.5e-20 100.5 67 74.6
Lsat_1_v5_gn_4_39741 Lactuca sativa HOM05D000818 ORTHO05D001324 6.5e-20 100.5 60 80.0
Lalb_Chr13g0290601 Lupinus albus HOM05D000818 ORTHO05D001324 6.5e-20 100.5 67 77.6
Manes.05G054700 Manihot esculenta HOM05D000818 ORTHO05D001324 6.5e-20 100.5 67 73.1
Hund17087 Selenicereus undatus HOM05D000818 ORTHO05D001324 6.5e-20 100.5 67 76.1
ECA234G3360 Erigeron canadensis HOM05D000818 ORTHO05D001324 8.4e-20 100.1 67 74.6
Carub.0005s2707 Capsella rubella HOM05D000818 ORTHO05D001324 1.1e-19 99.8 67 74.6
TWI59G1205 Tripterygium wilfordii HOM05D000818 ORTHO05D001324 1.1e-19 99.8 60 80.0
A04p01690 Brassica napus HOM05D000818 ORTHO05D001324 1.4e-19 99.4 67 74.6
BraA04t15893Z Brassica rapa HOM05D000818 ORTHO05D001324 1.4e-19 99.4 67 74.6
Cfa011073 Carpinus fangiana HOM05D000818 ORTHO05D001324 1.4e-19 99.4 66 75.8
HanXRQChr17g0562501 Helianthus annuus HOM05D000818 ORTHO05D001324 1.4e-19 99.4 69 69.6
QL04p030348 Quercus lobata HOM05D000818 ORTHO05D001324 1.4e-19 99.4 60 80.0
AL4G43920 Arabidopsis lyrata HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
Thhalv10001315m.g Eutrema salsugineum HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FvH4_7g10170 Fragaria vesca HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FAN03G2811 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FAN06G1514 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FAN06G5101 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FAN10G0853 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
FAN10G3602 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.9e-19 99.0 67 74.6
CANSAT21G0338 Cannabis sativa HOM05D000818 ORTHO05D001324 2.5e-19 98.6 60 78.3
CANSAT21G2497 Cannabis sativa HOM05D000818 ORTHO05D001324 2.5e-19 98.6 60 78.3
CARHR170640 Cardamine hirsuta HOM05D000818 ORTHO05D001324 2.5e-19 98.6 67 74.6
Medtr7g081705 Medicago truncatula HOM05D000818 ORTHO05D001324 2.5e-19 98.6 67 71.6
TPR.G14111 Trifolium pratense HOM05D000818 ORTHO05D001324 2.5e-19 98.6 67 71.6
MD02G1212400 Malus domestica HOM05D000818 ORTHO05D001324 3.2e-19 98.2 67 73.1
MD07G1108500 Malus domestica HOM05D000818 ORTHO05D001324 3.2e-19 98.2 67 73.1
SGA_v2.0_scaffold52G19225 Striga asiatica HOM05D000818 ORTHO05D001324 3.2e-19 98.2 67 73.1
A03p24960 Brassica napus HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
C03p29730 Brassica napus HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
BolC3t15323H Brassica oleracea HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
BraA03t11699Z Brassica rapa HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
Carub.0004s2741 Capsella rubella HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
CiPaw.14G020700 Carya illinoinensis HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
Gohir.A08G138400 Gossypium hirsutum HOM05D000818 ORTHO05D001324 4.2e-19 97.8 65 75.4
Gorai.004G165900 Gossypium raimondii HOM05D000818 ORTHO05D001324 4.2e-19 97.8 65 75.4
RcHm_v2.0_Chr1g0347891 Rosa chinensis HOM05D000818 ORTHO05D001324 4.2e-19 97.8 67 73.1
SalBow5G2839 Salvia bowleyana HOM05D000818 ORTHO05D001324 4.2e-19 97.8 60 78.3
SalBow5G2909 Salvia bowleyana HOM05D000818 ORTHO05D001324 4.2e-19 97.8 60 78.3
C08p35320 Brassica napus HOM05D000818 ORTHO05D001324 5.5e-19 97.4 67 73.1
Dinv44064 Davidia involucrata HOM05D000818 ORTHO05D001324 5.5e-19 97.4 60 76.7
Gohir.A08G058500 Gossypium hirsutum HOM05D000818 ORTHO05D001324 5.5e-19 97.4 67 70.1
Gohir.D08G067600 Gossypium hirsutum HOM05D000818 ORTHO05D001324 5.5e-19 97.4 67 70.1
Gorai.004G070400 Gossypium raimondii HOM05D000818 ORTHO05D001324 5.5e-19 97.4 67 70.1
Aa31LG1G26380 Aethionema arabicum HOM05D000818 ORTHO05D001324 7.1e-19 97.1 60 80.0
Sp4g26930 Schrenkiella parvula HOM05D000818 ORTHO05D001324 7.1e-19 97.1 67 71.6
Ca_08069_v3 Cicer arietinum L. HOM05D000818 ORTHO05D001324 9.3e-19 96.7 67 70.1
Cc02_g25100 Coffea canephora HOM05D000818 ORTHO05D001324 9.3e-19 96.7 67 71.6
A09p52560 Brassica napus HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 71.6
BolC8t51125H Brassica oleracea HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 71.6
BraA09t40687Z Brassica rapa HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 71.6
AUR62013745 Chenopodium quinoa HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 77.6
AUR62023406 Chenopodium quinoa HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 77.6
FAN01G1404 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 73.1
Psat3g098920 Pisum sativum HOM05D000818 ORTHO05D001324 1.2e-18 96.3 67 70.1
Glyma.03G111300 Glycine max HOM05D000818 ORTHO05D001324 1.6e-18 95.9 67 73.1
Lj1g0016313 Lotus japonicus HOM05D000818 ORTHO05D001324 1.6e-18 95.9 60 76.7
SalBow5G3905 Salvia bowleyana HOM05D000818 ORTHO05D001324 1.6e-18 95.9 67 68.7
GSVIVG01018276001 Vitis vinifera HOM05D000818 ORTHO05D001324 1.6e-18 95.9 69 71.0
Dinv43618 Davidia involucrata HOM05D000818 ORTHO05D001324 2.1e-18 95.5 67 68.7
Lalb_Chr03g0040381 Lupinus albus HOM05D000818 ORTHO05D001324 2.1e-18 95.5 67 68.7
Oeu020084.1 Olea europaea HOM05D000818 ORTHO05D001324 2.1e-18 95.5 67 71.6
arahy.Tifrunner.gnm1.ann1.TH0YQP Arachis hypogaea HOM05D000818 ORTHO05D001324 2.7e-18 95.1 67 71.6
arahy.Tifrunner.gnm1.ann1.YC8C9S Arachis hypogaea HOM05D000818 ORTHO05D001324 2.7e-18 95.1 67 71.6
EL10Ac1g00760 Beta vulgaris HOM05D000818 ORTHO05D001324 2.7e-18 95.1 67 76.1
CAN.G1473.11 Capsicum annuum HOM05D000818 ORTHO05D001324 2.7e-18 95.1 67 68.7
MSTRG.20692 Avicennia marina HOM05D000818 ORTHO05D001324 3.5e-18 94.7 67 70.1
CSS0009534 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 3.5e-18 94.7 70 65.7
Migut.N01737 Erythranthe guttata HOM05D000818 ORTHO05D001324 3.5e-18 94.7 60 75.0
Aqoxy7G00863 Aquilegia oxysepala HOM05D000818 ORTHO05D001324 4.6e-18 94.4 70 67.1
Peaxi162Scf00475g00517 Petunia axillaris HOM05D000818 ORTHO05D001324 4.6e-18 94.4 67 67.2
TPR.G33133 Trifolium pratense HOM05D000818 ORTHO05D001324 4.6e-18 94.4 67 70.1
arahy.Tifrunner.gnm1.ann1.27NEX2 Arachis hypogaea HOM05D000818 ORTHO05D001324 6.0e-18 94.0 67 68.7
arahy.Tifrunner.gnm1.ann1.U024VF Arachis hypogaea HOM05D000818 ORTHO05D001324 6.0e-18 94.0 67 68.7
Nitab4.5_0000920g0140 Nicotiana tabacum HOM05D000818 ORTHO05D001324 6.0e-18 94.0 67 67.2
Nitab4.5_0013736g0010 Nicotiana tabacum HOM05D000818 ORTHO05D001324 6.0e-18 94.0 67 67.2
unitig_8.g3851 Utricularia gibba HOM05D000818 ORTHO05D001324 6.0e-18 94.0 60 78.3
Actinidia32501 Actinidia chinensis HOM05D000818 ORTHO05D001324 1.0e-17 93.2 70 64.3
CSS0027266 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 1.0e-17 93.2 67 67.2
CSS0039590 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 1.0e-17 93.2 67 67.2
CARHR140070 Cardamine hirsuta HOM05D000818 ORTHO05D001324 1.0e-17 93.2 67 70.1
unitig_578.g16710 Utricularia gibba HOM05D000818 ORTHO05D001324 1.0e-17 93.2 66 69.7
Nn6g33830 Nelumbo nucifera HOM05D000818 ORTHO05D001324 1.3e-17 92.8 67 68.7
PGSC0003DMG400025994 Solanum tuberosum HOM05D000818 ORTHO05D001324 1.3e-17 92.8 67 67.2
Thhalv10006946m.g Eutrema salsugineum HOM05D000818 ORTHO05D001324 1.8e-17 92.4 67 70.1
Solyc01g090270.4 Solanum lycopersicum HOM05D000818 ORTHO05D001324 1.8e-17 92.4 67 67.2
Sopen01g036060 Solanum pennellii HOM05D000818 ORTHO05D001324 1.8e-17 92.4 67 67.2
AL1G10120 Arabidopsis lyrata HOM05D000818 ORTHO05D001324 2.3e-17 92.0 67 70.1
AT1G02110 Arabidopsis thaliana HOM05D000818 ORTHO05D001324 2.3e-17 92.0 67 70.1
Carub.0001s0011 Capsella rubella HOM05D000818 ORTHO05D001324 2.3e-17 92.0 67 70.1
CARHR000220 Cardamine hirsuta HOM05D000818 ORTHO05D001324 2.3e-17 92.0 67 70.1
DCAR_029467 Daucus carota HOM05D000818 ORTHO05D001324 3.0e-17 91.7 67 67.2
Glyma.09G242800 Glycine max HOM05D000818 ORTHO05D001324 3.0e-17 91.7 67 68.7
TAR629G1362 Trochodendron aralioides HOM05D000818 ORTHO05D001324 3.0e-17 91.7 60 75.0
Ciclev10018930m.g Citrus clementina HOM05D000818 ORTHO05D001324 3.9e-17 91.3 60 71.7
Phvul.008G046800 Phaseolus vulgaris HOM05D000818 ORTHO05D001324 3.9e-17 91.3 67 68.7
Rhsim07G0035800 Rhododendron simsii HOM05D000818 ORTHO05D001324 3.9e-17 91.3 67 64.2
SGA_v2.0_scaffold116G32291 Striga asiatica HOM05D000818 ORTHO05D001324 3.9e-17 91.3 60 73.3
Medtr8g006850 Medicago truncatula HOM05D000818 ORTHO05D001324 5.1e-17 90.9 61 77.0
Potri.002G137600 Populus trichocarpa HOM05D000818 ORTHO05D001324 5.1e-17 90.9 67 73.1
Glyma.18G251900 Glycine max HOM05D000818 ORTHO05D001324 8.7e-17 90.1 67 67.2
Lj3g0019294 Lotus japonicus HOM05D000818 ORTHO05D001324 8.7e-17 90.1 66 69.7
Sp1g00160 Schrenkiella parvula HOM05D000818 ORTHO05D001324 1.1e-16 89.7 67 68.7
vmacro13495 Vaccinium macrocarpon HOM05D000818 ORTHO05D001324 1.1e-16 89.7 67 62.7
Eucgr.D01227 Eucalyptus grandis HOM05D000818 ORTHO05D001324 2.5e-16 88.6 71 60.6
Rhsim01G0140100 Rhododendron simsii HOM05D000818 ORTHO05D001324 2.5e-16 88.6 67 64.2
HPP92_020676 Vanilla planifolia HOM05D000818 ORTHO05D001324 3.3e-16 88.2 67 62.7
VMungo1383G0257 Vigna mungo HOM05D000818 ORTHO05D001324 3.3e-16 88.2 67 67.2
VMungo0331G1446 Vigna mungo HOM05D000818 ORTHO05D001324 5.7e-16 87.4 67 67.2
Gohir.D08G159700 Gossypium hirsutum HOM05D000818 ORTHO05D001324 2.2e-15 85.5 54 77.8
Psat4g224960 Pisum sativum HOM05D000818 ORTHO05D001324 2.2e-15 85.5 61 72.1
Phvul.010G050100 Phaseolus vulgaris HOM05D000818 ORTHO05D001324 1.1e-14 83.2 58 72.4
PSO675G5646 Papaver somniferum HOM05D000818 ORTHO05D001324 1.4e-14 82.8 70 57.1
PSO732G0390 Papaver somniferum HOM05D000818 ORTHO05D001324 4.1e-14 81.3 70 55.7
SHI13617 Sapria himalayana HOM05D000818 ORTHO05D001324 6.9e-14 80.5 60 68.3
CDE09G1039 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 2.0e-13 79.0 60 60.0
CDE11G1168 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 2.0e-13 79.0 60 60.0
Os10g0562700 Oryza sativa ssp. japonica HOM05D000818 ORTHO05D001324 3.4e-13 78.2 65 61.5
Zm00001eb390970 Zea mays HOM05D000818 ORTHO05D001324 4.5e-13 77.8 65 60.0
unitig_61.g26431 Utricularia gibba HOM05D000818 ORTHO05D001324 1.3e-12 76.3 61 62.3
SEGI_13742 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 2.2e-12 75.5 61 63.9
Zm00001eb023690 Zea mays HOM05D000818 ORTHO05D001324 3.8e-12 74.7 65 58.5
ATR0057G102 Amborella trichopoda HOM05D000818 ORTHO05D001324 3.2e-11 71.6 60 60.0
SEGI_37967 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 1.6e-10 69.3 60 60.0
MBI04_g46825_MAGBIO Magnolia biondii HOM05D000818 ORTHO05D001324 3.6e-10 68.2 55 63.6
MBI04_g33723_MAGBIO Magnolia biondii HOM05D000818 ORTHO05D001324 1.0e-09 66.6 54 63.0
SEGI_02497 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 4.3e-08 61.2 82 45.1
Nn5g30763 Nelumbo nucifera HOM05D000818 ORTHO05D001324 3.7e-07 58.2 60 50.0
TAR628G1292 Trochodendron aralioides HOM05D000818 ORTHO05D001324 4.8e-07 57.8 67 43.3
HPP92_004935 Vanilla planifolia HOM05D000818 ORTHO05D001324 6.3e-07 57.4 60 48.3
Cpa.g.sc410.2 Carica papaya HOM05D000818 ORTHO05D001324 8.2e-07 57.0 64 50.0
Lj2C480T4 Lonicera japonica HOM05D000818 ORTHO05D001324 1.4e-06 56.2 67 44.8
MD15G1242800 Malus domestica HOM05D000818 ORTHO05D001324 1.8e-06 55.8 67 41.8
PSO293G0003 Papaver somniferum HOM05D000818 ORTHO05D001324 1.8e-06 55.8 67 43.3
PSO675G0382 Papaver somniferum HOM05D000818 ORTHO05D001324 1.8e-06 55.8 67 43.3
Aqoxy6G02199 Aquilegia oxysepala HOM05D000818 ORTHO05D001324 2.4e-06 55.5 67 41.8
CSS0045830 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 2.4e-06 55.5 67 41.8
Duzib147G1443 Durio zibethinus HOM05D000818 ORTHO05D001324 5.3e-06 54.3 67 41.8
MBI09_g03718_MAGBIO Magnolia biondii HOM05D000818 ORTHO05D001324 5.3e-06 54.3 67 38.8
Zm00001eb332010 Zea mays HOM05D000818 ORTHO05D001324 5.3e-06 54.3 60 43.3
Prupe.7G171300 Prunus persica HOM05D000818 ORTHO05D001324 6.9e-06 53.9 67 41.8
TAR376G0771 Trochodendron aralioides HOM05D000818 ORTHO05D001324 6.9e-06 53.9 57 49.1
MSTRG.23398 Avicennia marina HOM05D000818 ORTHO05D001324 9.1e-06 53.5 64 42.2
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 9.1e-06 53.5 37 67.6
Duzib187G1541 Durio zibethinus HOM05D000818 ORTHO05D001324 9.1e-06 53.5 67 41.8
Eucgr.J02464 Eucalyptus grandis HOM05D000818 ORTHO05D001324 9.1e-06 53.5 60 46.7


User provided reference genes

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