Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.7e-120 436.0 223 100.0
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.3e-117 426.4 223 97.3
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.2e-113 413.3 223 93.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 3.7e-107 391.7 223 89.7
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 8.2e-107 390.6 224 88.8
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.1e-95 353.6 223 79.8
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 5.5e-95 351.3 223 78.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.6e-94 349.7 223 79.8
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.7e-94 348.2 223 77.6
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.8e-93 346.3 224 76.3
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.8e-93 346.3 224 76.3
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 5.2e-93 344.7 228 79.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.1e-92 343.6 223 75.8
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 3.3e-92 342.0 223 76.2
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 4.4e-92 341.7 223 75.3
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 7.5e-92 340.9 223 77.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 9.7e-92 340.5 223 77.1
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-91 339.3 223 77.1
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.2e-91 339.3 223 77.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.8e-91 339.0 224 77.7
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-91 338.6 223 77.1
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.7e-91 338.6 223 75.8
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 3.7e-91 338.6 223 78.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 3.7e-91 338.6 223 74.0
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 3.7e-91 338.6 223 76.2
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 4.8e-91 338.2 224 75.9
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.8e-91 338.2 223 76.7
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 6.3e-91 337.8 224 77.7
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.2e-91 337.4 223 76.7
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 8.2e-91 337.4 223 78.0
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.4e-90 336.7 223 76.2
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.8e-90 336.3 223 74.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.4e-90 335.9 223 76.2
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.4e-90 335.9 223 77.6
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 4.1e-90 335.1 224 75.4
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 5.3e-90 334.7 223 74.0
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.6e-89 333.2 241 71.0
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.6e-89 333.2 223 75.3
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.0e-89 332.8 225 75.1
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 2.7e-89 332.4 223 78.0
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.5e-89 332.0 223 76.2
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.5e-89 332.0 223 76.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.5e-89 332.0 223 76.2
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 5.9e-89 331.3 223 75.8
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.7e-89 330.9 223 74.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.0e-88 330.5 223 77.6
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.7e-88 329.7 223 73.1
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.7e-88 329.7 223 74.4
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.2e-88 329.3 223 74.9
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.2e-88 329.3 223 74.0
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 2.9e-88 328.9 223 74.4
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.8e-88 328.6 241 69.7
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 5.0e-88 328.2 223 76.7
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 6.5e-88 327.8 223 74.9
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.5e-88 327.4 223 74.4
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 8.5e-88 327.4 223 73.1
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 8.5e-88 327.4 223 75.3
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.1e-87 327.0 221 73.3
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.5e-87 326.6 223 74.4
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.5e-87 326.6 223 73.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.5e-87 326.6 223 75.8
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.5e-87 326.6 225 73.8
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.9e-87 326.2 223 74.9
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.9e-87 326.2 267 64.8
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 2.5e-87 325.9 223 73.5
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 3.2e-87 325.5 223 73.1
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 3.2e-87 325.5 223 73.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.2e-87 325.1 223 74.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 7.2e-87 324.3 223 74.0
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 9.4e-87 323.9 223 71.7
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 9.4e-87 323.9 224 72.8
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.2e-86 323.6 223 75.3
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.7e-86 322.4 223 71.3
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 6.1e-86 321.2 223 73.1
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 6.1e-86 321.2 224 72.3
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 8.0e-86 320.9 223 71.3
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.4e-85 320.1 223 74.4
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 1.4e-85 320.1 223 74.0
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.4e-85 320.1 241 68.5
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.3e-85 319.3 223 72.6
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.0e-85 318.9 225 75.1
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 6.8e-85 317.8 223 72.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.6e-84 315.8 223 72.2
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 2.6e-84 315.8 218 72.0
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.4e-84 315.5 223 72.2
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.4e-84 315.5 223 71.7
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 4.4e-84 315.1 223 72.2
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 5.7e-84 314.7 223 73.1
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.3e-83 313.5 223 73.1
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.3e-83 313.5 223 71.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.2e-83 312.8 223 70.9
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 4.8e-83 311.6 223 69.1
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.4e-82 310.1 223 70.0
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 4.1e-82 308.5 223 69.5
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 7.0e-82 307.8 223 70.0
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 9.1e-82 307.4 223 69.1
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 9.1e-82 307.4 211 72.0
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-81 306.6 223 69.5
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 2.0e-81 306.2 223 69.5
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-81 305.8 223 69.1
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 5.9e-81 304.7 223 69.5
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 5.9e-81 304.7 223 69.5
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 5.9e-81 304.7 223 70.4
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.7e-80 303.1 223 69.1
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.9e-80 302.4 221 70.1
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 2.9e-80 302.4 223 68.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 2.5e-79 299.3 223 68.6
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.2e-79 298.9 200 76.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 5.5e-79 298.1 188 78.7
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.3e-75 284.6 246 62.6
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 4.1e-74 282.0 193 72.0
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.0e-74 281.2 223 64.6
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-73 280.4 238 61.3
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.0e-70 267.7 176 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.0e-68 263.1 223 57.0
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.9e-67 259.2 177 76.3
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 3.7e-67 258.8 224 57.6
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 4.9e-67 258.5 223 62.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 4.9e-67 258.5 224 59.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.5e-65 252.3 224 56.2
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.9e-65 251.5 224 56.7
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 2.5e-63 246.1 177 68.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 4.3e-63 245.4 188 64.9
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-61 238.4 166 69.3
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 5.8e-60 235.0 145 79.3
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 7.5e-60 234.6 191 60.2
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.1e-58 230.7 225 52.9
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.2e-57 227.3 225 54.7
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.0e-57 224.9 202 60.4
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.5e-55 219.5 145 73.1
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 7.3e-55 218.0 144 72.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 3.1e-53 212.6 149 69.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 5.2e-53 211.8 143 69.9
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.3e-51 204.5 135 74.1
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 2.7e-41 172.9 182 56.0
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 9.9e-36 154.5 106 74.5
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 7.8e-33 144.8 198 38.9
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 5.1e-32 142.1 107 71.0
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 8.7e-32 141.4 92 76.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 8.1e-30 134.8 99 64.6
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.3e-27 127.5 92 62.0
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 2.2e-27 126.7 234 36.3
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 4.9e-27 125.6 171 36.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.4e-21 107.5 81 67.9
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 7.9e-17 91.7 80 61.2
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-14 83.2 57 70.2
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-13 79.0 71 59.2
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 2.3e-08 63.5 45 66.7
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 6.7e-08 62.0 92 43.5


User provided reference genes

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