Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.7e-258 894.8 443 100.0
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.9e-228 795.0 411 95.6
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.8e-220 768.1 411 92.0
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.2e-211 738.4 413 86.9
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.1e-208 729.9 411 86.4
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.5e-176 623.2 412 72.8
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.5e-176 622.5 412 73.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.7e-175 619.8 412 72.6
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.3e-174 614.8 415 70.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 3.4e-173 612.1 414 71.7
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.1e-171 607.1 414 70.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.2e-171 605.5 437 68.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.6e-170 603.2 414 69.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.6e-170 603.2 412 70.6
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.1e-170 602.8 412 70.6
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-170 602.4 413 70.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.7e-170 602.4 411 72.0
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 4.7e-170 601.7 438 67.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 7.9e-170 600.9 415 71.3
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 7.9e-170 600.9 414 72.5
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.3e-169 599.4 412 70.6
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 5.1e-169 598.2 411 70.6
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.5e-168 596.7 415 71.1
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.6e-168 595.9 415 70.6
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.3e-168 595.5 417 69.5
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.7e-168 594.0 415 70.8
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.2e-167 592.8 413 69.7
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 2.8e-167 592.4 412 70.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-166 590.1 415 69.2
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 5.3e-166 588.2 418 70.3
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 7.0e-166 587.8 414 69.6
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 9.1e-166 587.4 414 69.6
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.6e-165 585.9 414 67.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 7.7e-165 584.3 415 68.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.0e-164 583.9 415 68.7
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-164 583.6 413 68.5
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-164 583.6 413 68.5
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.7e-164 583.2 414 67.4
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.7e-164 583.2 409 68.5
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.8e-164 582.0 411 67.4
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 8.5e-164 580.9 406 68.5
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.1e-163 580.5 416 67.1
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 2.5e-163 579.3 411 68.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.2e-163 578.9 413 68.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.2e-163 578.6 414 66.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 2.1e-162 576.2 412 68.0
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 3.6e-162 575.5 381 73.5
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 8.0e-162 574.3 411 68.9
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.4e-161 573.5 415 65.5
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.1e-160 570.5 409 67.0
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.5e-160 570.1 416 65.9
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 4.4e-160 568.5 397 68.8
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 2.2e-159 566.2 411 66.2
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 4.8e-159 565.1 412 66.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 6.3e-159 564.7 411 65.7
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 8.2e-159 564.3 410 68.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.8e-158 563.1 411 66.4
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 4.1e-158 562.0 417 65.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 5.3e-158 561.6 411 68.4
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 9.1e-158 560.8 410 66.6
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-157 560.5 413 67.1
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.0e-157 559.7 410 67.8
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 3.5e-157 558.9 412 66.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 4.5e-157 558.5 414 66.2
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.9e-157 558.1 410 67.3
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 7.7e-157 557.8 417 66.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 7.7e-157 557.8 417 66.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.8e-156 555.4 410 65.9
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.1e-155 553.9 414 66.2
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 411 66.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 2.1e-154 549.7 428 63.1
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.1e-154 549.7 410 67.1
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 3.6e-154 548.9 399 67.9
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 6.1e-154 548.1 436 62.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 8.0e-154 547.7 404 67.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 7.5e-152 541.2 411 65.2
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.7e-151 540.0 411 64.5
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-151 539.7 402 66.9
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.1e-150 537.3 392 69.4
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.8e-150 536.6 416 64.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 5.3e-150 535.0 388 66.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.7e-149 532.7 386 67.6
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 3.5e-149 532.3 375 68.0
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 6.5e-148 528.1 411 62.3
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.5e-147 526.2 394 64.7
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 5.5e-147 525.0 378 66.9
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 5.5e-147 525.0 373 67.0
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 5.5e-147 525.0 373 67.0
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.2e-146 523.9 386 66.3
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.7e-146 521.9 416 61.8
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 8.0e-146 521.2 388 66.8
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.8e-145 520.0 449 58.8
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.3e-145 519.6 415 63.1
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.2e-144 517.3 406 64.8
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.5e-144 516.9 393 65.4
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.0e-144 516.5 386 65.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.8e-143 511.9 388 66.0
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.8e-143 511.9 388 66.0
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 4.8e-143 511.9 388 65.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.8e-142 510.0 379 64.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.4e-142 509.6 378 64.3
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 9.1e-142 507.7 396 63.9
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.2e-141 507.3 349 68.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.6e-141 506.9 379 66.0
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.6e-141 506.9 390 64.6
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.0e-141 506.5 349 68.5
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.7e-141 506.1 387 65.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.9e-141 505.0 398 63.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.9e-140 502.7 375 65.6
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.0e-140 501.9 411 62.0
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.0e-140 501.9 411 62.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 8.6e-140 501.1 347 68.9
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 8.6e-140 501.1 378 63.5
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.1e-139 500.7 417 61.4
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.9e-139 500.0 377 64.7
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.1e-138 496.5 417 60.9
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.6e-138 495.7 377 64.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 5.7e-136 488.4 387 63.3
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.8e-136 487.6 346 66.5
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 4.9e-135 485.3 367 64.6
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 5.0e-132 475.3 335 71.0
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 7.0e-126 454.9 434 55.8
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.3e-123 445.7 318 67.6
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.3e-121 439.9 412 57.0
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 6.4e-119 431.8 332 66.3
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 3.3e-115 419.5 317 66.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 9.9e-104 381.3 411 50.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.4e-103 378.6 358 57.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 4.6e-101 372.5 276 65.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 4.6e-101 372.5 276 65.6
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.1e-97 361.3 393 50.1
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.1e-91 341.3 386 48.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.3e-79 301.2 228 66.2
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 3.5e-69 266.5 187 69.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.3e-66 258.1 327 45.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.2e-64 251.5 237 55.7
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.3e-63 248.1 163 72.4
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 4.8e-58 229.6 261 51.0
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.5e-55 219.2 159 64.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.2e-37 161.8 160 54.4
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-34 151.8 107 65.4
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 2.5e-30 137.5 138 55.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 3.2e-30 137.1 109 64.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.6e-29 133.7 110 61.8
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 8.8e-28 129.0 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-10 72.0 50 60.0
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 3.5e-08 63.9 67 47.8


User provided reference genes

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