Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 8.3e-277 956.4 494 100.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.0e-270 935.3 491 97.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.7e-245 852.4 491 89.0
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.8e-224 781.2 488 80.7
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.1e-219 765.8 486 80.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 6.7e-218 760.8 485 79.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.5e-217 759.6 492 78.7
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.7e-217 757.7 485 79.2
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.8e-216 755.4 493 77.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.7e-216 755.0 492 78.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.7e-216 755.0 487 78.2
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.2e-216 753.8 484 79.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.1e-215 753.4 491 80.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-215 753.1 482 79.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-215 752.3 484 79.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 5.3e-215 751.1 488 78.1
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.2e-214 750.0 484 78.9
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.6e-214 748.8 484 81.0
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.5e-214 748.0 489 77.1
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.6e-214 747.3 486 77.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 7.6e-214 747.3 488 78.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.3e-213 746.5 485 77.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.8e-213 745.0 489 77.3
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 8.5e-213 743.8 483 78.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-212 743.4 487 77.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.9e-212 742.7 487 76.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 3.2e-212 741.9 492 77.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.2e-212 741.9 488 77.5
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.5e-212 741.1 487 76.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 6.1e-211 737.6 481 78.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 6.1e-211 737.6 494 77.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.3e-210 735.7 491 78.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.3e-210 735.7 491 78.6
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 8.7e-210 733.8 487 77.0
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.1e-209 733.4 484 76.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.3e-209 731.9 481 78.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-208 729.9 487 75.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.6e-208 729.6 486 76.3
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.6e-208 729.6 490 73.7
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.2e-208 729.2 489 76.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.7e-208 728.4 489 75.5
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.7e-208 728.4 491 75.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.8e-208 728.0 489 75.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.8e-207 726.1 491 74.1
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.1e-207 725.3 486 76.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.1e-207 725.3 489 75.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 3.1e-207 725.3 491 74.1
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.1e-207 725.3 491 74.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.1e-207 724.9 485 75.3
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.3e-207 724.5 485 75.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 5.3e-207 724.5 485 75.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 2.6e-206 722.2 484 76.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.9e-206 721.1 486 74.3
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.3e-205 719.9 486 75.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.2e-205 719.2 485 75.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.9e-205 718.8 485 75.3
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 6.5e-205 717.6 491 74.5
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.5e-204 715.7 491 73.5
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.2e-204 715.3 485 75.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 7.2e-204 714.1 484 74.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.2e-204 714.1 485 74.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 7.2e-204 714.1 487 74.3
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 9.4e-204 713.8 484 74.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 9.4e-204 713.8 484 74.0
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 9.4e-204 713.8 489 74.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-203 713.0 484 73.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.6e-203 713.0 484 73.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-203 712.6 484 73.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 2.1e-203 712.6 491 74.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 4.6e-203 711.4 485 74.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 4.6e-203 711.4 495 74.3
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.9e-203 710.7 485 74.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 7.9e-203 710.7 486 74.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-202 709.1 485 74.8
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-202 709.1 485 74.0
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.9e-202 708.4 485 74.0
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 8.8e-202 707.2 484 73.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.1e-201 706.8 488 74.6
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.0e-201 706.1 486 74.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-201 705.3 494 72.1
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.3e-201 705.3 522 71.3
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 4.4e-201 704.9 483 73.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 9.7e-201 703.7 511 72.0
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 4.8e-200 701.4 485 73.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 6.3e-200 701.0 526 71.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.3e-200 701.0 485 74.0
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.4e-199 699.1 505 70.9
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 4.1e-199 698.4 487 72.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.0e-198 696.0 495 71.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-198 695.7 489 73.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.9e-198 694.5 488 73.6
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-196 689.5 492 72.2
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-196 689.5 492 72.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.2e-195 686.8 485 74.2
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 5.2e-194 681.4 486 73.7
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.6e-193 679.1 486 71.4
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 9.7e-193 677.2 488 69.5
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.3e-192 676.8 487 70.8
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.1e-191 672.2 486 70.2
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 5.3e-191 671.4 488 70.5
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.2e-190 670.2 501 69.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.8e-189 665.2 500 68.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.1e-187 659.4 516 67.6
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.6e-187 658.7 457 73.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.0e-186 655.6 357 96.1
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 8.8e-186 654.1 491 68.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 9.7e-185 650.6 486 71.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.3e-183 644.8 488 67.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.2e-181 639.4 486 66.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.0e-181 638.3 491 70.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.5e-180 636.7 490 67.3
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.5e-180 636.0 584 58.6
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.5e-180 636.0 519 64.9
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.2e-180 635.2 495 65.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.2e-179 633.6 483 69.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.6e-179 632.1 487 68.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.6e-179 632.1 488 67.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.8e-178 629.8 563 60.9
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.2e-178 628.2 486 66.7
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.2e-177 627.1 459 70.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 8.3e-176 620.9 489 66.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.8e-175 619.8 492 62.8
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.5e-172 607.4 484 65.3
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 8.0e-171 604.4 503 61.4
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.1e-167 592.4 394 75.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.2e-163 580.5 494 64.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 3.3e-156 555.8 528 56.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 5.6e-156 555.1 457 61.9
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.0e-153 546.6 376 75.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-151 540.0 490 58.0
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-148 530.8 388 73.2
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 1.8e-146 523.5 543 55.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 7.5e-145 518.1 395 67.1
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-144 517.3 346 77.5
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.9e-144 516.2 351 77.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.4e-138 497.3 391 67.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.3e-132 476.1 363 70.2
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 5.8e-129 465.3 358 69.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.3e-124 449.1 464 53.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.8e-123 445.7 299 77.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-121 440.3 396 62.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-119 434.1 281 80.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.6e-118 429.1 273 80.2
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-115 420.6 300 70.7
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.4e-113 412.9 275 78.2
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.9e-85 319.7 231 71.9
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.2e-79 300.1 251 66.5
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-77 293.5 189 76.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-75 287.3 171 82.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.8e-75 287.0 479 38.2
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.2e-65 255.0 133 96.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 7.7e-65 252.3 220 63.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 8.0e-62 242.3 200 61.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.8e-56 223.4 131 80.9
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-55 221.5 132 80.3
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-52 211.8 230 53.5
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 7.5e-52 209.1 326 42.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.7e-51 208.0 130 77.7
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.5e-47 194.9 153 68.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.9e-47 194.5 298 44.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-40 171.8 114 73.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 8.0e-38 162.5 126 65.1
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.2e-35 154.5 95 75.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.2e-35 154.5 95 75.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.3e-35 152.5 216 43.5
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.1e-34 152.1 114 66.7
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.7e-27 127.1 63 98.4
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.6e-25 120.2 68 83.8
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 5.6e-23 113.2 60 86.7
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.6e-22 111.7 67 76.1
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-21 108.2 92 63.0
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.0e-21 107.1 66 75.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.2e-21 106.7 65 80.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.4e-20 103.6 65 76.9
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-19 102.1 65 75.4
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-17 95.1 65 76.9
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-17 94.4 77 64.9
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 4.6e-17 93.6 100 55.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.9e-15 88.2 188 37.2
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 6.9e-13 79.7 48 70.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 6.6e-08 63.2 33 84.8
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-07 61.6 48 72.9


User provided reference genes

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