Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.2e-137 490.3 240 100.0
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 5.8e-50 201.8 115 83.5
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.3e-49 200.7 115 83.5
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.4e-49 198.4 115 83.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.6e-47 193.7 115 80.0
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 4.0e-43 179.1 115 72.2
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.0e-43 179.1 115 72.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.0e-43 179.1 115 72.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.0e-43 179.1 115 72.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.2e-42 177.6 115 69.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.2e-42 177.6 115 71.3
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.6e-42 176.4 115 70.4
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.6e-42 176.4 114 70.2
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 4.5e-42 175.6 115 70.4
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 5.8e-42 175.3 115 69.6
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 9.9e-42 174.5 131 62.6
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 9.9e-42 174.5 114 69.3
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.3e-41 174.1 115 68.7
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.7e-41 173.7 114 71.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 1.7e-41 173.7 114 68.4
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.7e-41 173.7 115 67.8
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.7e-41 173.7 115 67.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.2e-41 173.3 114 68.4
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.2e-41 173.3 115 69.6
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 2.2e-41 173.3 114 69.3
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 2.9e-41 172.9 115 67.8
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.8e-41 172.6 115 69.6
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.8e-41 172.6 118 67.8
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 4.9e-41 172.2 110 71.8
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 6.4e-41 171.8 112 69.6
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 6.4e-41 171.8 115 68.7
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 6.4e-41 171.8 112 67.9
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 6.4e-41 171.8 146 56.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.4e-41 171.8 115 66.1
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.4e-41 171.8 115 66.1
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.4e-41 171.8 114 68.4
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 68.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 68.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 67.5
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 67.5
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 67.5
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 67.5
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 8.4e-41 171.4 114 67.5
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.4e-41 171.4 115 66.1
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.1e-40 171.0 114 68.4
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.1e-40 171.0 114 67.5
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-40 171.0 114 70.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.4e-40 170.6 114 67.5
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.4e-40 170.6 114 67.5
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.4e-40 170.6 106 73.6
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.4e-40 170.6 140 60.0
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 1.4e-40 170.6 114 66.7
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.4e-40 170.6 115 66.1
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-40 170.2 114 67.5
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-40 170.2 114 67.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-40 170.2 114 67.5
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-40 170.2 114 67.5
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.9e-40 170.2 112 67.9
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.9e-40 170.2 112 67.9
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.9e-40 170.2 115 66.1
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.9e-40 170.2 114 66.7
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.4e-40 169.9 114 65.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.4e-40 169.9 115 66.1
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 2.4e-40 169.9 115 66.1
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.2e-40 169.5 115 66.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 3.2e-40 169.5 110 70.0
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 3.2e-40 169.5 114 68.4
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 4.2e-40 169.1 114 66.7
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.2e-40 169.1 114 66.7
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 4.2e-40 169.1 114 65.8
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 5.5e-40 168.7 114 66.7
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 5.5e-40 168.7 114 66.7
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 5.5e-40 168.7 115 65.2
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 7.1e-40 168.3 115 65.2
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 7.1e-40 168.3 110 70.0
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 7.1e-40 168.3 115 66.1
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 9.3e-40 167.9 110 69.1
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 9.3e-40 167.9 114 66.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.3e-40 167.9 143 57.3
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.3e-40 167.9 143 57.3
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 9.3e-40 167.9 115 67.0
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 9.3e-40 167.9 115 68.7
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 9.3e-40 167.9 114 66.7
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 9.3e-40 167.9 116 68.1
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 9.3e-40 167.9 114 65.8
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 9.3e-40 167.9 115 67.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-39 167.5 114 66.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.2e-39 167.5 114 66.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.6e-39 167.2 114 66.7
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.1e-39 166.8 113 65.5
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 3.5e-39 166.0 115 65.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 4.6e-39 165.6 115 66.1
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.6e-39 165.6 114 66.7
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 4.6e-39 165.6 114 64.0
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 4.6e-39 165.6 114 68.4
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 7.9e-39 164.9 115 64.3
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 7.9e-39 164.9 115 64.3
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 7.9e-39 164.9 114 65.8
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.0e-38 164.5 115 66.1
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.3e-38 164.1 114 65.8
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 1.3e-38 164.1 115 62.6
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.3e-38 164.1 121 62.8
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.3e-38 164.1 143 54.5
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.8e-38 163.7 114 65.8
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.1e-37 161.0 111 66.7
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-37 160.2 118 61.0
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.9e-37 160.2 112 65.2
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.9e-37 160.2 112 65.2
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.3e-37 159.5 114 63.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 5.6e-37 158.7 115 60.0
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.3e-36 157.5 112 64.3
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.3e-36 157.5 150 53.3
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.3e-36 157.5 150 53.3
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.6e-36 157.1 194 46.9
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.8e-36 156.4 115 60.0
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.7e-36 156.0 114 62.3
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.8e-35 153.7 112 63.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 4.0e-35 152.5 110 65.5
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 3.4e-34 149.4 98 69.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 3.4e-34 149.4 98 69.4
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 4.5e-34 149.1 119 61.3
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.8e-34 148.7 86 77.9
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.8e-33 146.0 124 56.5
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.8e-33 146.0 110 62.7
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 8.4e-33 144.8 115 56.5
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.1e-32 144.4 115 60.9
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.4e-32 144.1 104 63.5
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 9.3e-32 141.4 118 58.5
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.2e-31 141.0 117 55.6
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 8.7e-30 134.8 132 50.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.1e-29 134.4 185 41.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.7e-28 129.4 76 76.3
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.3e-20 104.4 90 56.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 4.1e-19 99.4 101 52.5
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 5.9e-18 95.5 75 61.3
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.6e-15 86.3 114 46.5
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.0e-14 84.7 65 56.9
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.8e-14 84.0 52 71.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.5e-13 80.9 75 50.7
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 7.4e-13 78.6 65 50.8
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 4.8e-12 75.9 63 55.6
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 6.3e-12 75.5 101 38.6
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.9e-09 66.6 58 53.4
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 6.5e-09 65.5 51 54.9
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 2.5e-08 63.5 68 47.1
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-07 60.8 68 44.1
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 1.0e-06 58.2 48 52.1
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.8e-06 57.4 68 42.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.3e-06 57.0 63 41.3


User provided reference genes

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