Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 7.5e-250 866.7 429 100.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 8.3e-148 527.7 401 70.1
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 5.0e-145 518.5 397 70.8
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-119 433.0 407 60.2
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 3.6e-119 432.6 398 61.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 6.2e-119 431.8 407 60.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.3e-116 424.1 400 56.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.7e-116 423.7 350 62.3
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 8.3e-116 421.4 358 60.3
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 1.4e-115 420.6 398 58.3
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 5.4e-115 418.7 413 57.4
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 5.4e-115 418.7 399 57.9
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 5.4e-115 418.7 399 57.9
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 7.1e-115 418.3 402 58.5
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 7.1e-115 418.3 404 57.2
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 9.2e-115 417.9 404 58.7
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.1e-114 416.8 395 57.5
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 4.6e-114 415.6 371 60.6
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 4.6e-114 415.6 359 62.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 7.8e-114 414.8 382 58.6
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.0e-113 414.5 410 55.9
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.0e-113 414.5 414 56.3
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.0e-113 412.9 379 58.8
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.6e-113 411.8 416 56.2
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 6.6e-113 411.8 359 61.8
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.1e-112 411.0 405 56.5
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.5e-112 409.8 402 57.2
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 3.3e-112 409.5 399 56.9
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.3e-112 409.1 402 57.0
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 5.6e-112 408.7 365 60.3
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 5.6e-112 408.7 402 57.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 7.3e-112 408.3 411 55.7
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 7.3e-112 408.3 401 55.9
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.6e-111 407.1 394 58.1
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 2.1e-111 406.8 365 60.0
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.8e-111 406.4 400 57.8
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 2.8e-111 406.4 350 60.3
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 3.6e-111 406.0 406 54.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.7e-111 405.6 406 56.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 6.2e-111 405.2 399 57.9
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 6.2e-111 405.2 399 58.1
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 6.2e-111 405.2 373 58.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 3.1e-110 402.9 357 59.7
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 5.2e-110 402.1 356 59.3
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 8.9e-110 401.4 394 56.1
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.2e-109 401.0 395 54.9
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.5e-109 400.6 407 54.1
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.5e-109 400.6 407 56.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.0e-109 400.2 401 55.6
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 2.6e-109 399.8 364 58.2
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.6e-109 399.8 406 55.4
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.4e-109 399.4 355 60.6
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 3.4e-109 399.4 356 59.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 5.8e-109 398.7 389 55.5
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 5.8e-109 398.7 350 59.4
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 9.9e-109 397.9 401 54.4
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 1.7e-108 397.1 391 55.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.7e-108 397.1 400 56.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.7e-108 397.1 388 56.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.9e-108 396.4 362 59.1
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.8e-108 396.0 350 60.6
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.1e-107 394.4 357 58.8
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.4e-107 393.3 365 58.9
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.2e-106 391.0 376 55.9
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.1e-106 390.2 402 55.7
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 7.8e-106 388.3 399 57.1
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.7e-105 387.1 359 57.4
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.9e-105 386.0 377 56.8
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 8.7e-105 384.8 363 57.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-104 384.4 379 56.7
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 1.9e-104 383.6 363 57.6
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.9e-104 383.6 359 57.1
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.9e-104 383.6 422 53.8
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 2.5e-104 383.3 355 57.5
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.3e-103 380.9 352 59.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.8e-103 379.8 378 55.8
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.8e-103 379.8 404 52.2
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 6.2e-103 378.6 353 55.8
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-102 377.5 409 51.8
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 2.4e-102 376.7 335 59.7
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 3.1e-102 376.3 396 53.0
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.6e-101 371.7 360 56.1
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 7.6e-101 371.7 404 53.7
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 9.9e-101 371.3 360 55.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.3e-100 370.9 393 53.9
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.7e-100 370.5 386 53.4
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 2.9e-100 369.8 401 52.4
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 7.1e-99 365.2 328 59.5
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.2e-98 364.4 292 65.1
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.6e-98 364.0 369 58.0
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.5e-98 362.8 354 55.6
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.5e-98 362.8 381 53.8
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.0e-97 361.3 374 52.9
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 9.9e-93 344.7 402 50.2
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 6.4e-92 342.0 352 54.0
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 5.4e-91 339.0 379 50.7
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.5e-90 336.3 342 55.8
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 3.5e-90 336.3 352 52.6
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.3e-89 334.3 337 56.4
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.9e-88 330.5 374 52.7
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 4.3e-88 329.3 309 56.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 5.6e-88 328.9 426 46.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 7.4e-88 328.6 370 50.0
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 1.6e-87 327.4 403 48.4
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.8e-86 323.9 291 58.8
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.0e-85 320.5 374 49.5
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.7e-84 317.4 396 46.2
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.3e-83 311.6 279 56.3
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 4.3e-80 302.8 289 54.7
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 4.6e-74 282.7 299 53.8
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.0e-68 265.0 343 47.5
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.0e-64 250.8 402 40.8
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.0e-64 250.8 330 46.4
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.0e-56 224.2 250 49.2
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.7e-55 219.9 295 48.5
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 8.2e-55 218.8 264 47.0
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.5e-53 214.5 282 47.9
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.0e-52 211.8 242 50.8
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.4e-46 191.4 251 43.4
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.8e-46 191.0 242 45.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.2e-45 188.3 247 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.6e-45 187.2 252 43.3
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.0e-44 185.3 253 42.3
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.2e-42 178.3 238 42.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.6e-40 170.6 249 41.4
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.3e-39 168.3 355 34.4
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 8.0e-34 149.1 105 66.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.0e-33 148.7 338 34.9
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.4e-33 148.3 100 70.0
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 6.3e-31 139.4 159 49.7
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 9.5e-27 125.6 109 56.0
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 9.5e-27 125.6 200 43.0
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 4.0e-25 120.2 104 62.5
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.2e-23 114.4 197 36.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.2e-21 108.6 84 65.5
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 4.7e-18 96.7 111 48.6
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 2.6e-16 90.9 92 55.4
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 9.8e-16 89.0 129 42.6
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 2.2e-15 87.8 65 63.1
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.3e-12 78.6 98 48.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 8.9e-09 65.9 29 93.1
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.4e-08 63.5 119 33.6
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.9e-06 58.2 50 62.0
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 3.2e-06 57.4 146 26.0


User provided reference genes

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