Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 9.3e-162 573.5 304 100.0
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.9e-157 557.4 304 96.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 5.1e-144 514.6 304 88.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 2.0e-132 476.1 304 82.2
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 3.8e-131 471.9 304 80.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.6e-129 465.3 304 79.6
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 4.7e-129 464.9 304 79.3
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.1e-127 460.3 304 78.6
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.8e-126 454.9 304 78.9
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.4e-125 453.4 297 79.1
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.8e-125 453.0 304 79.6
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.4e-125 452.6 303 77.2
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.4e-125 452.6 303 77.2
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 5.3e-125 451.4 303 79.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.1e-125 450.7 304 78.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.0e-123 447.2 304 77.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.8e-123 445.3 304 77.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 6.5e-123 444.5 297 79.1
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 8.5e-123 444.1 304 76.6
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.1e-122 443.7 305 78.7
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.5e-122 443.4 301 77.7
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.5e-122 442.6 299 77.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.5e-122 442.6 304 76.6
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 5.5e-122 441.4 304 76.3
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 76.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 8.0e-121 437.6 305 77.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.0e-120 437.2 293 78.8
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 2.3e-120 436.0 304 76.0
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.0e-120 435.6 304 75.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 4.0e-120 435.3 302 76.5
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 8.8e-120 434.1 304 76.6
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-119 433.3 304 75.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.5e-119 433.3 304 75.3
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.5e-119 433.3 293 77.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.0e-119 433.0 305 75.4
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.6e-119 432.6 304 75.3
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.8e-118 429.1 305 75.1
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 6.3e-118 427.9 297 76.4
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.3e-118 427.9 304 75.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.3e-118 427.9 304 75.0
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.4e-117 426.8 305 74.1
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 9.1e-117 424.1 304 75.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.2e-116 423.7 305 73.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.7e-116 422.5 293 75.8
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.7e-116 422.5 304 74.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.7e-116 422.5 293 74.7
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 2.7e-116 422.5 304 74.3
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 7.7e-116 421.0 301 74.8
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.0e-115 420.6 304 72.4
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.7e-115 419.9 293 74.1
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.7e-115 419.9 304 73.0
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.7e-115 419.9 293 76.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.2e-115 419.5 293 75.4
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.2e-115 419.5 304 74.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.9e-115 419.1 297 75.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 3.8e-115 418.7 293 75.8
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 3.8e-115 418.7 299 74.2
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 5.0e-115 418.3 308 71.8
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 6.5e-115 417.9 298 73.5
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 8.5e-115 417.5 310 71.3
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-114 417.2 309 71.2
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-114 417.2 304 72.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.1e-114 417.2 297 75.1
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.2e-114 415.2 304 73.7
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 7.2e-114 414.5 308 71.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.6e-113 412.1 304 72.7
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 8.0e-113 411.0 304 72.4
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 70.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 293 73.7
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.4e-112 410.2 304 72.4
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.3e-112 409.5 304 70.4
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.5e-111 406.8 306 70.6
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.4e-111 405.6 304 70.1
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.4e-111 405.6 304 70.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 5.7e-111 404.8 300 71.3
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.5e-111 404.4 304 71.7
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 9.8e-111 404.1 304 69.7
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 69.7
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.8e-110 402.5 291 72.9
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 6.3e-110 401.4 304 70.7
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.8e-109 399.8 304 70.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 4.1e-109 398.7 304 70.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.1e-109 398.7 304 69.4
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 5.4e-109 398.3 293 72.7
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.1e-109 397.5 304 70.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.6e-108 396.7 293 72.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.9e-107 392.5 281 74.0
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-106 390.6 281 75.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.5e-106 390.2 292 70.9
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.9e-106 389.8 304 71.1
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 6.1e-105 384.8 291 71.5
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 3.0e-104 382.5 290 71.4
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 8.9e-104 380.9 281 73.3
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.2e-102 376.3 290 69.0
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.9e-102 375.2 281 73.0
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.1e-101 374.0 298 68.5
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 7.0e-101 371.3 304 64.8
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 9.2e-101 370.9 298 66.4
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.0e-99 367.5 297 67.0
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.6e-99 364.8 290 67.6
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 9.5e-98 360.9 291 67.7
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.8e-97 359.4 304 62.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.0e-96 357.5 292 65.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.0e-92 343.2 281 66.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 7.8e-92 341.3 273 68.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.7e-86 323.6 278 65.1
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 2.2e-86 323.2 218 79.8
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 4.7e-81 305.4 299 61.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-76 290.8 198 76.8
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.0e-76 288.5 194 77.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 9.6e-74 281.2 295 55.9
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.2e-73 280.8 302 52.6
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 6.0e-68 261.9 175 77.7
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 1.9e-66 256.9 290 51.7
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 9.9e-63 244.6 291 50.2
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.9e-61 240.4 195 67.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 6.6e-59 231.9 159 76.7
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.3e-58 228.4 206 58.3
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.6e-57 227.3 336 44.0
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.6e-50 202.2 139 75.5
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 2.6e-47 193.4 142 70.4
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 3.2e-45 186.4 235 52.8
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 6.2e-41 172.2 211 48.3
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 8.2e-41 171.8 115 80.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.1e-40 169.9 186 54.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.5e-34 150.2 99 73.7
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 7.4e-34 148.7 108 71.3
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.8e-32 144.1 182 42.9
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.5e-30 135.6 95 75.8
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.4e-29 134.4 172 48.3
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 5.9e-23 112.5 54 96.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.0e-19 101.7 282 31.2
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.0e-18 97.4 86 62.8
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 3.3e-18 96.7 302 28.5
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 2.0e-15 87.4 58 70.7
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.6e-15 87.0 172 35.5
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 1.1e-13 81.6 40 90.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.5e-13 80.5 150 38.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.6e-12 76.6 85 60.0
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 5.7e-10 69.3 56 66.1


User provided reference genes

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