Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.0e-131 470.7 251 100.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.3e-124 447.2 251 96.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.1e-115 417.5 207 98.6
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.0e-114 414.5 251 86.1
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 8.6e-113 410.6 251 87.6
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.6e-98 363.2 212 84.4
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-97 360.5 216 81.9
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.0e-97 359.0 209 82.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.6e-95 352.1 214 80.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.6e-95 352.1 219 79.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.4e-94 350.1 212 80.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-94 349.7 211 82.0
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.3e-94 348.2 210 81.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 6.9e-94 347.8 240 72.5
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.0e-93 346.3 219 79.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.8e-93 344.7 207 80.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.3e-92 343.6 208 79.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.9e-92 342.4 209 80.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.9e-92 341.7 211 80.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 8.4e-92 340.9 209 82.3
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.4e-91 339.3 216 79.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 4.2e-91 338.6 218 79.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 5.4e-91 338.2 216 78.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.4e-91 338.2 216 78.7
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 7.1e-91 337.8 214 77.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.1e-91 337.8 214 77.6
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 7.1e-91 337.8 209 78.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 9.3e-91 337.4 213 77.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-90 337.0 216 78.7
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-90 337.0 216 78.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.2e-90 337.0 241 72.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.6e-90 336.7 210 80.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.6e-90 336.7 210 80.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.7e-90 335.9 211 79.1
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.7e-90 335.9 216 78.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.5e-90 335.5 209 78.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 6.0e-90 334.7 214 76.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.9e-90 334.3 216 77.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.9e-90 334.3 216 77.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.7e-89 333.2 202 79.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.7e-89 333.2 211 77.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.0e-89 332.4 211 77.7
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.9e-89 332.0 211 75.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.9e-89 332.0 211 77.3
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.6e-89 331.3 213 76.1
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.1e-88 330.5 211 76.8
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.3e-88 328.6 211 74.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.3e-88 328.6 211 74.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.6e-88 328.2 210 77.6
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.6e-88 328.2 211 76.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.6e-88 328.2 200 78.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 9.6e-88 327.4 212 76.4
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.6e-87 326.6 211 76.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.8e-87 325.1 214 73.4
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.0e-86 320.9 211 77.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.0e-86 320.9 209 76.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.6e-85 319.3 213 72.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.4e-85 318.9 214 75.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.3e-84 317.0 212 74.5
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.9e-84 315.8 218 74.3
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.8e-84 315.5 212 75.0
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.8e-84 315.5 212 75.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.4e-84 314.3 198 73.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.4e-84 314.3 197 77.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.1e-83 313.9 207 74.9
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.1e-83 313.9 197 77.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.4e-83 313.5 210 72.4
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 4.2e-83 312.0 204 75.0
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 7.1e-83 311.2 216 73.1
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.2e-82 310.5 210 71.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.6e-82 310.1 211 73.0
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.7e-82 309.3 204 74.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.6e-82 308.5 212 70.8
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.0e-81 307.4 194 77.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.0e-81 307.4 207 71.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.0e-81 307.4 201 75.6
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.8e-81 306.6 198 77.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.3e-81 306.2 209 72.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-80 303.9 214 70.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 2.5e-80 302.8 216 68.5
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.5e-80 302.8 199 74.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 9.6e-80 300.8 201 71.1
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.4e-78 296.2 203 72.9
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 5.3e-78 295.0 205 69.8
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.6e-77 291.2 221 66.5
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.6e-77 291.2 213 67.6
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.8e-76 288.9 198 70.7
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.9e-76 288.5 205 67.3
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.5e-75 285.0 203 69.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.1e-74 283.1 219 64.8
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-73 280.8 203 72.4
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.8e-73 280.0 183 72.7
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.9e-73 278.9 203 71.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.9e-73 278.9 201 69.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.9e-73 278.9 206 68.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.5e-72 276.2 207 68.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.5e-72 276.2 201 67.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 5.7e-72 275.0 201 67.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-72 274.6 207 67.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 7.4e-72 274.6 207 68.1
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.4e-72 274.6 207 67.6
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.4e-72 274.6 207 67.6
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 7.4e-72 274.6 207 68.1
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.6e-72 274.2 207 68.6
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 9.6e-72 274.2 207 67.6
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-71 273.1 207 67.1
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-71 272.7 207 67.1
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.8e-71 272.7 207 67.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.8e-71 271.9 204 68.6
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 4.8e-71 271.9 204 68.1
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.8e-71 271.9 207 67.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-70 270.8 250 58.4
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-70 270.4 207 67.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.4e-70 270.4 204 68.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-69 266.9 208 65.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-69 266.9 204 64.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 4.5e-69 265.4 211 62.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.5e-69 265.4 197 68.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 7.2e-67 258.1 207 62.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.2e-66 257.3 194 66.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.6e-66 256.9 201 62.2
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 7.9e-66 254.6 208 60.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.7e-64 248.4 199 64.3
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 7.4e-64 248.1 216 63.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.3e-63 247.3 215 64.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.2e-59 232.6 143 78.3
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.1e-58 229.9 196 57.1
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 5.1e-57 225.3 164 68.9
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.7e-57 224.9 167 68.9
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.0e-52 208.8 206 55.3
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.2e-51 206.1 162 63.0
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 9.4e-51 204.5 120 80.0
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.6e-45 187.2 121 72.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.0e-45 186.8 194 53.6
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.5e-43 179.9 127 70.9
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.0e-40 170.2 111 69.4
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 7.5e-40 168.3 102 77.5
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.7e-39 167.2 104 77.9
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.3e-19 99.8 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 9.8e-16 88.2 94 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 4.4e-08 62.8 159 29.6
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 7.5e-08 62.0 191 24.6
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 1.7e-07 60.8 150 30.7
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 8.3e-07 58.5 103 29.1


User provided reference genes

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