Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 2.9e-89 332.0 189 100.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 2.0e-82 309.3 190 81.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.0e-73 280.4 189 84.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.7e-66 255.8 189 80.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.9e-59 233.0 188 73.9
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.3e-35 151.0 86 76.7
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 2.1e-34 149.8 205 45.4
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 2.1e-34 149.8 205 45.4
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 6.0e-34 148.3 195 43.6
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.8e-34 147.9 96 65.6
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.8e-34 147.9 96 64.6
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.8e-34 147.9 96 64.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.0e-33 147.5 217 42.9
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.0e-33 147.5 219 45.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.0e-33 147.5 207 44.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.3e-33 147.1 91 73.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.3e-33 147.1 96 66.7
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 2.3e-33 146.4 223 39.0
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.0e-33 146.0 205 45.9
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.9e-33 145.6 96 64.6
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 5.1e-33 145.2 125 56.0
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 8.7e-33 144.4 88 72.7
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.5e-32 142.9 86 70.9
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.5e-32 142.9 86 70.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.3e-32 142.5 199 43.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 4.3e-32 142.1 86 69.8
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.3e-32 142.1 86 69.8
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 7.3e-32 141.4 198 37.9
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 7.3e-32 141.4 190 44.2
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 9.6e-32 141.0 198 38.9
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.3e-31 140.6 93 68.8
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.3e-31 140.6 118 58.5
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.6e-31 139.0 86 67.4
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.6e-31 139.0 206 44.2
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 3.6e-31 139.0 197 41.6
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.6e-31 139.0 118 59.3
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 4.8e-31 138.7 207 40.1
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.8e-31 138.7 125 56.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 6.2e-31 138.3 86 67.4
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 8.1e-31 137.9 190 45.3
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.8e-30 136.7 123 58.5
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.4e-30 136.3 198 43.9
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.1e-30 136.0 86 70.9
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.1e-30 136.0 86 67.4
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.0e-30 135.6 215 42.3
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 5.3e-30 135.2 91 65.9
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.9e-30 134.8 184 41.3
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 6.9e-30 134.8 126 56.3
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.2e-29 134.0 184 45.7
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.5e-29 133.7 86 67.4
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.5e-29 133.7 93 63.4
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.0e-29 133.3 86 68.6
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.0e-29 133.3 96 65.6
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.6e-29 132.9 86 72.1
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.6e-29 132.9 86 66.3
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 3.4e-29 132.5 96 65.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-29 131.7 84 69.0
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 7.6e-29 131.3 86 68.6
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 9.9e-29 131.0 84 69.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.3e-28 130.6 96 64.6
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.7e-28 130.2 214 39.3
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-28 130.2 84 67.9
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.7e-28 130.2 86 67.4
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-28 129.8 86 69.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 2.9e-28 129.4 86 69.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 2.9e-28 129.4 92 60.9
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-28 129.4 84 67.9
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.8e-28 129.0 204 40.7
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.9e-28 128.6 90 63.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 4.9e-28 128.6 100 60.0
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 4.9e-28 128.6 128 53.1
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.4e-28 128.3 104 59.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 8.4e-28 127.9 125 54.4
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-28 127.9 86 68.6
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 8.4e-28 127.9 86 68.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-28 127.9 89 64.0
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-28 127.9 89 64.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.1e-27 127.5 86 67.4
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-27 127.5 86 68.6
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-27 127.5 187 39.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.4e-27 127.1 86 68.6
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.4e-27 127.1 128 52.3
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.9e-27 126.7 86 67.4
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.9e-27 126.7 88 68.2
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.4e-27 126.3 186 39.2
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.4e-27 126.3 128 51.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.4e-27 125.2 84 65.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 7.1e-27 124.8 197 39.6
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 7.1e-27 124.8 86 65.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 7.1e-27 124.8 86 66.3
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 65.1
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.1e-26 123.2 86 64.0
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.9e-26 121.3 86 61.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.9e-26 121.3 89 61.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.3e-25 120.6 86 61.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.3e-25 120.6 188 37.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.8e-25 120.2 86 66.3
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-24 117.5 84 63.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 7.4e-24 114.8 84 61.9
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 7.4e-24 114.8 84 61.9
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 9.6e-24 114.4 84 60.7
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 9.6e-24 114.4 84 60.7
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 9.6e-24 114.4 84 60.7
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 5.3e-22 108.6 86 57.0
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.5e-21 107.1 86 60.5
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.6e-21 106.3 220 35.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.6e-21 106.3 77 59.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.4e-21 105.9 99 52.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.4e-21 105.9 99 52.5
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 4.5e-21 105.5 97 52.6
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 4.5e-21 105.5 97 52.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.5e-21 105.5 192 34.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 4.5e-21 105.5 96 52.1
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 4.5e-21 105.5 96 52.1
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.7e-20 103.6 86 61.6
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.7e-20 103.6 86 61.6
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.9e-20 102.8 86 58.1
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 3.8e-20 102.4 86 58.1
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-19 100.9 89 56.2
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.1e-19 100.9 86 55.8
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.4e-19 100.5 86 55.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.4e-19 100.5 174 35.6
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.9e-19 100.1 86 54.7
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-19 99.8 97 50.5
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.2e-19 99.4 89 55.1
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 5.5e-19 98.6 97 49.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 5.5e-19 98.6 97 49.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 7.1e-19 98.2 97 51.5
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 7.1e-19 98.2 131 43.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.1e-19 98.2 88 52.3
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-18 97.4 97 48.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-18 97.4 97 48.5
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-18 97.4 97 48.5
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-18 97.4 97 48.5
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-18 97.4 195 36.4
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-18 96.3 86 54.7
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.5e-18 95.9 84 54.8
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.6e-18 95.5 86 54.7
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.6e-18 95.5 86 54.7
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 4.6e-18 95.5 181 35.4
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.0e-18 95.1 201 32.3
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 7.9e-18 94.7 80 57.5
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.0e-17 92.8 144 40.3
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-16 90.9 86 52.3
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.1e-16 90.9 80 56.2
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.9e-16 90.1 90 54.4
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.5e-16 89.7 86 53.5
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-15 87.4 86 51.2
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.8e-15 86.3 76 53.9
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 4.8e-15 85.5 83 49.4
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.8e-14 83.6 97 45.4
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.4e-14 83.2 86 44.2
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.6e-13 79.7 82 46.3
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.6e-13 79.7 84 48.8
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.0e-12 77.8 54 63.0
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.7e-12 77.0 86 48.8
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.2e-12 76.6 62 56.5
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 1.1e-11 74.3 86 50.0
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.9e-11 73.6 53 67.9
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.6e-10 70.5 86 44.2
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.0e-09 67.8 86 44.2
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.0e-09 66.2 87 46.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 4.3e-08 62.4 50 62.0
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.3e-07 60.8 93 41.9
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 4.8e-07 58.9 51 60.8
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 4.8e-07 58.9 51 60.8
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 1.8e-06 57.0 50 56.0
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 6.9e-06 55.1 44 61.4
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 9.0e-06 54.7 49 55.1
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 9.0e-06 54.7 189 28.0


User provided reference genes

Program Settings