Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 1.2e-80 303.1 151 100.0
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 5.8e-72 274.2 155 91.6
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 2.1e-50 202.6 151 78.1
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 3.0e-36 155.6 129 70.5
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 2.8e-18 95.9 127 45.7
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 8.2e-18 94.4 127 45.7
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.8e-17 93.2 126 42.9
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 3.5e-16 89.0 121 46.3
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 4.5e-16 88.6 143 41.3
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 2.2e-15 86.3 147 38.1
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 5.0e-15 85.1 83 55.4
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 8.5e-15 84.3 147 36.7
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 8.5e-15 84.3 145 41.4
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 8.5e-15 84.3 145 41.4
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 8.5e-15 84.3 126 42.9
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.5e-14 83.6 140 41.4
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.5e-14 82.8 141 41.8
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 3.2e-14 82.4 149 38.9
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 3.2e-14 82.4 149 37.6
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 5.5e-14 81.6 143 41.3
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 7.2e-14 81.3 123 41.5
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 7.2e-14 81.3 65 58.5
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 9.4e-14 80.9 127 40.2
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 4.7e-13 78.6 126 42.1
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.4e-12 77.0 158 34.2
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.8e-12 76.6 142 37.3
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 2.3e-12 76.3 126 41.3
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 3.0e-12 75.9 128 37.5
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 5.2e-12 75.1 132 40.2
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 6.7e-12 74.7 125 41.6
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 6.7e-12 74.7 125 41.6
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 6.7e-12 74.7 134 37.3
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 8.8e-12 74.3 118 40.7
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 2.0e-11 73.2 143 37.8
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.0e-11 73.2 149 39.6
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 2.0e-11 73.2 118 41.5
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.6e-11 72.8 158 39.9
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.6e-11 72.8 86 47.7
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 4.4e-11 72.0 99 46.5
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 5.7e-11 71.6 128 39.1
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 7.5e-11 71.2 120 45.0
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 7.5e-11 71.2 87 41.4
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 9.7e-11 70.9 88 45.5
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 1.7e-10 70.1 119 38.7
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.2e-10 69.7 112 38.4
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 2.8e-10 69.3 115 45.2
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 3.7e-10 68.9 118 40.7
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 4.8e-10 68.6 140 32.9
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.3e-10 68.2 83 47.0
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.2e-10 67.8 90 43.3
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 8.2e-10 67.8 127 34.6
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.1e-09 67.4 118 39.8
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.4e-09 67.0 66 48.5
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 1.8e-09 66.6 74 45.9
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.8e-09 66.6 124 37.9
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.4e-09 66.2 66 47.0
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.4e-09 66.2 105 41.0
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.4e-09 66.2 123 30.9
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 2.4e-09 66.2 83 45.8
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.4e-09 66.2 83 45.8
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 7.0e-09 64.7 126 38.9
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 9.1e-09 64.3 76 36.8
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 9.1e-09 64.3 117 35.9
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 1.2e-08 63.9 60 56.7
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 2.7e-08 62.8 56 55.4
Zm00001eb141720 Zea mays HOM05D024678 ORTHO05D025976 2.7e-08 62.8 70 48.6
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 4.5e-08 62.0 98 39.8
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 4.5e-08 62.0 76 40.8
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 5.9e-08 61.6 125 36.0
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 5.9e-08 61.6 96 39.6
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 1.0e-07 60.8 137 29.2
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 1.3e-07 60.5 90 37.8
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 1.7e-07 60.1 98 39.8
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.7e-07 60.1 128 34.4
Phvul.003G206500 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 2.9e-07 59.3 127 29.1
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 2.9e-07 59.3 55 49.1
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 3.8e-07 58.9 98 37.8
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 5.0e-07 58.5 114 36.8
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.1e-06 57.4 66 43.9
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 3.2e-06 55.8 67 44.8
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.2e-06 55.8 115 37.4
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 4.2e-06 55.5 62 45.2
QL10p006100 Quercus lobata HOM05D007296 ORTHO05D009201 4.2e-06 55.5 58 50.0
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 5.5e-06 55.1 67 43.3
VMungo1215G1852 Vigna mungo HOM05D007296 ORTHO05D009201 5.5e-06 55.1 127 32.3
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 7.2e-06 54.7 57 43.9
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 7.2e-06 54.7 65 43.1


User provided reference genes

Program Settings