Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 3.5e-152 541.6 269 100.0
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 6.6e-143 510.8 284 90.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.7e-141 504.6 284 89.8
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 6.8e-116 421.0 245 86.1
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.6e-99 365.9 280 66.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.2e-98 362.8 279 64.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.8e-98 362.1 283 63.6
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 6.4e-98 361.3 255 68.2
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 8.4e-98 360.9 241 71.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 8.4e-98 360.9 300 63.3
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.1e-97 360.5 227 73.6
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.9e-97 359.8 282 66.0
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.9e-97 359.8 282 66.0
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 3.2e-97 359.0 241 70.1
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.2e-97 359.0 282 65.6
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.4e-97 358.2 235 72.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 5.4e-97 358.2 283 65.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.4e-97 358.2 266 67.7
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 5.4e-97 358.2 282 65.2
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 7.1e-97 357.8 221 76.5
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 7.1e-97 357.8 283 64.7
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.6e-96 356.7 289 63.3
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.1e-96 356.3 238 70.2
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.5e-96 355.5 285 64.6
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.0e-95 354.0 280 65.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.0e-95 354.0 287 63.1
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.9e-95 352.1 284 63.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 6.7e-95 351.3 289 62.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 8.7e-95 350.9 228 72.8
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.5e-94 350.1 236 69.5
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.9e-94 349.7 280 65.0
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-94 349.7 264 65.5
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.9e-94 349.7 264 65.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.5e-94 349.4 278 63.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.3e-94 348.6 282 62.8
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 4.3e-94 348.6 252 66.7
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.6e-93 346.7 293 61.1
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 2.1e-93 346.3 282 63.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.8e-93 345.9 281 62.6
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.8e-93 345.9 228 71.9
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.8e-93 345.9 218 74.8
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.2e-93 344.7 282 62.4
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.2e-93 344.7 304 60.2
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.2e-93 344.7 221 72.4
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.4e-92 343.6 232 71.1
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.4e-92 342.8 277 62.1
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.4e-92 342.8 250 67.6
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.1e-92 342.4 278 62.6
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 5.3e-92 341.7 261 66.3
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 5.3e-92 341.7 275 61.8
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.4e-91 339.0 229 69.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.4e-91 339.0 227 69.6
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 9.9e-91 337.4 275 61.1
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.3e-90 337.0 279 60.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-90 337.0 250 66.8
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 3.8e-90 335.5 220 70.5
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 3.8e-90 335.5 229 68.1
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.9e-90 335.1 250 64.0
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 6.4e-90 334.7 287 59.2
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.4e-89 333.6 227 69.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.4e-89 333.6 227 69.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 3.2e-89 332.4 290 59.0
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 4.2e-89 332.0 262 62.2
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 5.5e-89 331.6 227 69.2
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 7.1e-89 331.3 243 65.4
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 9.3e-89 330.9 227 68.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.2e-88 330.5 273 59.7
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.6e-88 330.1 283 60.1
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.1e-88 329.7 228 67.5
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 3.5e-88 328.9 246 64.2
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 4.6e-88 328.6 227 69.2
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 7.9e-88 327.8 288 59.7
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.3e-87 327.0 228 68.9
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 3.9e-87 325.5 281 60.1
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 3.9e-87 325.5 277 59.6
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 3.9e-87 325.5 239 64.4
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 8.7e-87 324.3 289 59.2
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 8.7e-87 324.3 284 58.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.5e-86 323.6 276 57.2
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.3e-86 322.4 297 58.2
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 7.4e-86 321.2 293 57.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.3e-85 320.5 280 57.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.3e-85 320.5 226 66.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.2e-85 318.2 276 60.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.8e-84 316.6 316 54.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 7.6e-83 311.2 305 54.8
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.0e-82 310.8 188 76.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.7e-82 310.1 235 61.7
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 2.9e-82 309.3 285 56.8
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 3.8e-82 308.9 284 56.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 9.3e-81 304.3 227 65.6
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.2e-80 303.9 235 62.6
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.5e-80 302.4 250 62.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 3.5e-80 302.4 246 61.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.1e-76 290.8 250 57.6
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 8.5e-74 281.2 201 65.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.1e-73 280.8 281 52.3
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 7.2e-73 278.1 226 57.1
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 7.2e-73 278.1 221 60.2
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 9.3e-73 277.7 270 53.7
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.6e-72 276.9 181 71.3
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.5e-70 270.4 221 59.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.9e-70 270.0 285 53.7
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 7.4e-70 268.1 183 70.5
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 7.4e-70 268.1 302 50.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.8e-69 266.2 273 52.4
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 4.1e-68 262.3 273 49.5
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.1e-68 262.3 183 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.5e-67 260.4 288 50.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.2e-65 252.7 174 69.0
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 5.5e-65 251.9 179 65.9
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.2e-61 240.0 289 49.8
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 2.8e-61 239.6 149 73.2
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.4e-60 237.3 192 60.9
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 5.2e-55 218.8 229 51.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 8.0e-48 194.9 308 37.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 5.2e-47 192.2 128 69.5
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.5e-46 190.7 285 44.6
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 8.2e-45 184.9 127 66.1
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.3e-42 177.6 163 51.5
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.1e-40 170.2 288 38.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.9e-33 147.1 126 57.1
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 5.5e-33 145.6 113 62.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 2.1e-32 143.7 189 47.6
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.0e-31 139.4 115 58.3
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.6e-27 127.5 119 52.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 2.0e-27 127.1 84 69.0
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.9e-25 120.6 193 36.3
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.2e-21 107.1 63 69.8
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 1.5e-17 94.4 77 57.1
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.3e-17 93.2 77 54.5
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 3.3e-17 93.2 81 55.6
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.0e-15 86.3 56 64.3
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 3.7e-13 79.7 89 51.7


User provided reference genes

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