Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 0.0e+00 1417.9 715 100.0
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 0.0e+00 1363.6 715 96.1
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 0.0e+00 1312.4 715 92.7
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 0.0e+00 1245.7 715 87.6
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 3.1e-280 968.4 713 66.5
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 2.3e-275 952.2 722 65.9
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 1.9e-269 932.6 717 63.7
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 3.5e-268 928.3 706 64.9
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.0e-267 926.8 717 64.4
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.5e-266 922.9 706 64.7
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 2.5e-266 922.2 712 64.2
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 4.3e-266 921.4 718 64.5
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 9.5e-266 920.2 715 63.8
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 8.1e-265 917.1 723 63.5
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.8e-264 916.0 723 63.3
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 2.0e-263 912.5 686 65.0
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 5.8e-263 911.0 738 61.5
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 6.4e-262 907.5 717 62.8
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 2.4e-261 905.6 708 63.7
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 5.4e-261 904.4 715 62.7
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 7.1e-261 904.0 721 62.6
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.2e-257 893.3 715 64.3
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.1e-257 892.5 750 60.0
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.1e-257 892.5 738 60.8
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 2.1e-257 892.5 714 60.9
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.6e-257 891.7 747 60.4
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 8.1e-257 890.6 713 62.3
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 1.8e-256 889.4 734 61.2
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.4e-256 889.0 715 61.4
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.1e-256 888.6 716 62.0
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 4.0e-256 888.3 653 65.7
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 1.2e-255 886.7 714 60.5
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 1.2e-255 886.7 714 61.1
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 2.0e-255 885.9 713 62.6
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 2.6e-255 885.6 703 63.3
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 4.4e-255 884.8 714 62.6
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 2.2e-254 882.5 718 60.9
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 6.4e-254 880.9 738 60.0
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 2.4e-253 879.0 713 62.0
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 3.5e-252 875.2 712 60.7
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 6.0e-252 874.4 705 60.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.7e-251 872.8 716 61.6
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 5.1e-251 871.3 722 60.1
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.1e-248 863.6 715 61.3
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.1e-248 863.6 712 61.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 1.9e-245 852.8 714 60.2
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 1.6e-244 849.7 700 59.9
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 3.7e-241 838.6 698 61.5
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 1.1e-240 837.0 716 58.5
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 4.5e-239 831.6 683 60.8
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 4.3e-234 815.1 727 57.9
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 4.3e-234 815.1 696 59.1
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 5.6e-234 814.7 696 59.6
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 9.6e-234 813.9 713 57.6
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 1.6e-233 813.1 716 58.2
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 2.0e-231 806.2 716 57.7
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.0e-230 803.9 717 58.3
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 8.4e-230 800.8 652 60.6
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 8.4e-230 800.8 717 57.5
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 8.4e-230 800.8 719 58.6
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 1.1e-229 800.4 712 58.6
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.1e-229 800.4 715 56.2
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.4e-229 800.0 651 59.4
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 1.4e-229 800.0 725 57.1
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.6e-228 796.6 707 57.1
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.0e-227 793.9 715 57.9
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 1.3e-227 793.5 711 59.1
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 1.8e-227 793.1 719 58.1
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 2.3e-227 792.7 710 58.0
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 2.3e-227 792.7 710 58.0
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 1.9e-226 789.6 709 57.5
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 4.3e-226 788.5 710 58.2
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 9.7e-226 787.3 710 57.6
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 8.2e-225 784.3 710 57.7
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.4e-224 783.5 715 56.4
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 5.3e-224 781.6 710 57.7
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 1.2e-223 780.4 710 58.2
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.5e-223 780.0 710 57.6
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 2.2e-222 776.2 714 54.8
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 5.0e-222 775.0 710 57.3
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 5.5e-221 771.5 679 58.3
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 5.5e-221 771.5 700 57.7
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 1.2e-220 770.4 715 55.8
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 2.1e-220 769.6 623 61.6
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 5.1e-219 765.0 720 53.9
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 8.7e-219 764.2 603 63.3
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.4e-216 756.9 665 58.3
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 2.4e-216 756.1 615 59.2
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.3e-214 750.4 635 61.3
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 9.4e-213 744.2 701 55.5
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.6e-212 743.4 715 54.8
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 2.1e-212 743.0 702 56.1
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 5.9e-207 724.9 693 54.8
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 7.7e-207 724.5 717 53.6
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 7.2e-205 718.0 787 50.3
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 2.1e-204 716.5 738 51.1
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 2.6e-199 699.5 621 57.6
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 2.3e-195 686.4 718 50.6
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.7e-193 680.2 592 59.0
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 1.3e-190 670.6 717 50.1
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 5.5e-189 665.2 706 51.1
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 1.5e-186 657.1 710 49.9
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.6e-180 637.1 523 62.3
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.6e-172 610.5 708 48.3
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.3e-169 600.9 619 50.9
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.3e-153 547.7 423 64.8
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 1.9e-152 543.9 507 56.6
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 3.2e-152 543.1 523 56.0
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 5.1e-150 535.8 638 47.8
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 1.5e-141 507.7 712 45.8
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.8e-130 469.2 422 56.2
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 8.2e-116 422.2 749 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 4.2e-112 409.8 761 35.9
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 3.3e-101 373.6 718 34.4
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 2.9e-89 334.0 480 42.3
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.0e-82 311.2 340 47.6
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.7e-81 308.1 331 48.6
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.1e-80 305.4 302 54.6
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 1.8e-62 245.0 288 49.0
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 9.8e-61 239.2 246 50.4
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 7.5e-53 213.0 334 39.8
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.0e-50 204.9 255 43.5
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 3.3e-48 197.6 166 59.0
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 2.1e-42 178.3 432 29.9
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 4.3e-32 144.1 485 28.0
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 8.9e-30 136.3 130 53.8
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.2e-28 131.7 155 48.4
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 9.2e-27 126.3 303 32.0
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 8.1e-23 113.2 64 81.2
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 7.3e-16 90.1 91 51.6
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 6.9e-14 83.6 101 44.6
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 4.2e-11 74.3 67 59.7
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.0e-09 69.7 80 48.8
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 1.1e-08 66.2 57 63.2


User provided reference genes

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