Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 8.1e-214 746.9 399 100.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 9.6e-207 723.4 399 96.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.6e-206 722.6 399 95.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 3.5e-193 678.3 400 90.2
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 9.0e-189 663.7 400 88.2
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.4e-173 612.5 401 79.1
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.2e-172 610.1 401 78.6
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 5.0e-171 604.7 401 78.3
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.3e-168 595.9 401 75.6
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.3e-168 595.9 401 75.6
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.5e-167 592.4 401 74.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.3e-167 592.0 401 73.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.3e-167 592.0 401 76.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-166 590.1 401 74.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.3e-166 590.1 402 74.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.6e-166 589.7 401 75.1
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.6e-166 589.7 401 74.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.2e-166 589.3 401 76.6
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.2e-166 589.3 401 73.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 3.7e-166 588.6 401 77.3
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.4e-165 586.6 401 75.1
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.4e-165 585.9 401 75.3
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.4e-165 585.9 400 74.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.2e-164 583.6 401 73.3
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.5e-164 583.2 405 72.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.4e-164 582.0 416 72.8
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 4.5e-164 581.6 402 72.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.0e-163 580.5 402 72.4
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.0e-163 580.5 402 72.4
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.0e-163 580.5 401 72.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.8e-163 578.6 405 73.6
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 3.8e-163 578.6 401 73.3
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.5e-163 577.8 405 73.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 6.5e-163 577.8 400 73.2
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 8.5e-163 577.4 404 73.5
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.9e-162 576.2 405 76.0
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 2.5e-162 575.9 401 74.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.2e-162 575.1 405 71.4
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.5e-162 574.7 403 74.2
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.5e-162 574.7 404 71.5
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 7.2e-162 574.3 405 71.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 9.4e-162 573.9 401 73.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.6e-161 573.2 402 74.4
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.6e-161 573.2 401 72.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.7e-161 572.4 402 72.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.6e-161 571.6 402 71.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 6.1e-161 571.2 401 73.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 7.9e-161 570.9 401 72.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.0e-160 570.5 401 71.8
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.8e-160 569.7 390 73.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.3e-160 569.3 401 70.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 3.9e-160 568.5 401 72.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-159 567.0 403 71.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.5e-159 566.6 405 70.6
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.0e-159 566.2 403 72.5
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.0e-159 566.2 403 72.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 4.3e-159 565.1 406 75.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.7e-159 564.7 405 70.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 9.7e-159 563.9 402 72.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.3e-158 563.5 399 74.2
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-158 563.1 401 70.8
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.8e-158 562.4 406 72.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.7e-158 562.0 401 70.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.3e-158 561.2 401 73.1
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-157 560.5 401 74.3
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.1e-157 560.5 401 74.3
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-157 560.1 402 70.1
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.1e-157 558.9 401 71.6
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.9e-157 557.8 401 72.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.0e-156 556.2 438 67.4
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 4.5e-156 555.1 400 69.8
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.9e-156 554.7 400 70.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.7e-156 554.3 401 69.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-155 553.5 401 69.3
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.8e-155 552.0 401 73.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.8e-155 552.0 401 69.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.8e-155 552.0 402 71.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 8.5e-155 550.8 401 70.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.9e-154 549.7 401 70.3
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.9e-154 549.7 446 64.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 7.2e-154 547.7 401 69.8
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 9.4e-154 547.4 401 69.6
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 9.4e-154 547.4 401 69.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 9.4e-154 547.4 401 69.1
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.6e-153 546.6 401 69.8
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.7e-153 545.0 401 69.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.1e-153 544.7 399 67.7
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.1e-152 541.6 400 69.8
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.1e-152 541.6 401 70.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.5e-151 540.0 401 69.6
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 2.0e-151 539.7 400 66.5
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 3.3e-151 538.9 401 73.6
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.7e-151 538.1 401 69.6
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 9.7e-151 537.3 401 68.3
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.7e-150 536.6 401 68.3
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 3.7e-150 535.4 403 68.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.4e-149 533.5 406 67.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.8e-149 533.1 400 71.5
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.1e-149 532.3 405 67.2
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.1e-149 530.8 427 64.9
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 4.5e-148 528.5 399 65.4
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 5.9e-148 528.1 449 63.7
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 2.9e-147 525.8 401 68.3
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.8e-147 525.4 400 67.2
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 5.0e-147 525.0 439 64.9
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 5.5e-146 521.5 401 63.6
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.6e-145 520.0 401 66.3
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 8.0e-145 517.7 401 65.3
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.4e-143 511.1 402 64.7
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-142 510.4 401 69.1
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.8e-142 509.2 401 65.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.1e-141 507.3 406 67.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.3e-139 500.4 399 61.7
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 3.0e-136 489.2 403 65.5
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.6e-135 486.1 404 65.1
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.3e-134 481.5 410 63.4
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.9e-131 472.6 400 58.8
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 8.0e-129 464.5 366 64.8
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.8e-128 463.4 333 71.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.0e-123 445.3 514 49.2
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 6.6e-123 444.9 317 70.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.7e-119 431.8 377 59.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.1e-114 417.5 435 55.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-109 401.0 438 54.8
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.9e-109 400.2 297 68.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.4e-109 398.7 403 54.3
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.4e-109 398.7 403 54.3
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 2.3e-107 393.3 401 50.9
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.0e-107 392.1 405 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 6.8e-96 355.1 400 50.8
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.6e-92 344.0 406 53.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 2.1e-89 333.6 403 47.4
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.4e-79 299.7 404 46.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 9.0e-72 275.0 197 70.1
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.3e-69 265.0 357 44.0
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 2.5e-61 240.4 432 36.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.3e-58 229.6 302 43.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 5.3e-56 222.6 277 49.1
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.4e-50 202.2 149 71.1
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.4e-45 185.3 145 75.2
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.0e-31 141.0 100 68.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.0e-26 124.4 123 55.3
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.7e-26 122.1 105 56.2
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 413 27.8
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-24 118.6 95 67.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.2e-23 115.2 83 78.3
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 5.2e-19 99.8 60 80.0
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.0e-18 97.8 70 68.6
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.4e-18 97.1 68 63.2
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 7.5e-18 95.9 443 26.9
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.1e-16 90.5 400 26.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-13 81.6 79 63.3
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.9e-13 81.3 61 57.4
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 7.2e-13 79.3 453 25.2
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 5.9e-07 59.7 86 44.2
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.0e-06 58.9 52 53.8
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.8e-06 57.0 28 85.7
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 8.6e-06 55.8 62 48.4


User provided reference genes

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