Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 3.1e-105 385.2 198 100.0
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 8.3e-103 377.1 198 96.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.6e-90 335.1 198 86.4
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.7e-76 289.7 198 72.2
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.6e-76 287.7 196 73.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.5e-75 285.8 198 73.7
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 3.3e-75 285.4 198 72.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.1e-74 282.7 197 73.1
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.8e-74 282.3 197 73.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.4e-73 279.3 198 71.7
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.0e-73 278.5 198 72.2
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.0e-73 278.5 198 72.7
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 6.9e-73 277.7 198 71.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 6.9e-73 277.7 206 70.9
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.2e-72 276.9 198 71.2
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.2e-72 276.9 198 71.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.5e-72 276.6 198 67.2
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-72 276.6 198 67.2
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.6e-72 275.8 197 70.1
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.6e-72 275.8 198 71.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 4.5e-72 275.0 195 70.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 7.6e-72 274.2 198 70.7
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 7.6e-72 274.2 197 70.6
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.6e-72 274.2 198 66.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 9.9e-72 273.9 197 71.1
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.3e-71 273.5 197 70.6
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.3e-71 273.5 198 70.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.3e-71 273.5 198 71.2
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.3e-71 273.5 198 71.7
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.7e-71 273.1 198 70.2
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.2e-71 272.7 198 70.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.8e-71 271.9 199 70.9
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.8e-71 271.9 198 71.2
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.9e-70 269.6 197 70.1
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.9e-70 269.6 197 70.1
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.2e-70 268.5 198 68.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.2e-70 268.5 198 69.2
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 5.5e-70 268.1 200 68.0
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.6e-69 266.5 201 67.2
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 2.1e-69 266.2 198 66.2
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.7e-69 265.8 197 69.0
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.6e-69 265.0 198 69.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 4.6e-69 265.0 196 67.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.0e-69 264.6 198 70.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 7.9e-69 264.2 198 66.7
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 7.9e-69 264.2 198 69.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.3e-68 263.5 199 67.3
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.3e-68 263.5 198 69.2
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-68 263.5 198 69.2
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.8e-68 263.1 198 67.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-68 262.7 198 69.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.3e-68 262.7 216 64.8
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.3e-68 262.7 196 64.8
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 6.7e-68 261.2 197 67.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.5e-67 260.0 199 66.3
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.9e-67 259.6 197 66.0
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 5.6e-67 258.1 188 71.8
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.3e-66 256.9 198 66.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.6e-66 256.5 186 69.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.7e-66 255.4 195 68.2
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.8e-66 255.0 198 65.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.4e-65 252.7 195 64.6
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.1e-65 252.3 198 66.7
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.2e-64 250.4 195 61.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.5e-64 250.0 189 68.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.5e-64 248.4 206 62.1
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 4.5e-64 248.4 198 64.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.7e-63 246.5 197 62.4
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.8e-63 245.4 198 64.1
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 6.5e-63 244.6 198 61.6
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.1e-62 243.8 198 62.6
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.2e-62 242.3 198 61.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.0e-60 237.3 198 61.6
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.0e-60 237.3 198 62.1
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.3e-60 236.9 198 61.6
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.3e-60 236.9 198 61.1
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 3.0e-60 235.7 198 61.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 3.0e-60 235.7 198 61.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 5.1e-60 235.0 198 61.1
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 6.7e-60 234.6 198 60.6
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.5e-59 233.4 198 61.1
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-59 233.4 198 61.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-59 232.6 198 61.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.5e-59 232.6 198 61.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 4.3e-59 231.9 213 56.3
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 9.6e-59 230.7 198 60.1
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.8e-58 229.2 198 58.6
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.1e-57 227.3 224 54.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.4e-57 226.1 198 60.1
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.0e-57 224.2 179 66.5
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.6e-56 221.1 178 65.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.7e-55 219.9 160 71.2
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.7e-55 219.9 193 59.6
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.9e-54 216.5 211 52.1
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 4.6e-53 211.8 186 59.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.3e-51 205.3 198 52.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.8e-50 201.8 160 63.8
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.1e-49 200.7 147 68.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.4e-49 200.3 179 58.7
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.8e-49 199.9 195 55.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.4e-49 199.5 218 50.9
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.9e-48 194.9 124 79.0
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 4.6e-45 185.3 122 74.6
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-41 172.9 177 58.8
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-38 161.4 159 58.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.2e-31 139.8 196 39.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.9e-31 139.4 127 59.8
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.2e-30 136.0 118 61.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.1e-25 120.9 104 61.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-23 114.4 74 77.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.2e-23 113.2 110 53.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.2e-22 109.0 102 57.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.6e-21 105.9 204 40.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.4e-20 104.0 74 66.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-18 97.4 125 49.6
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.7e-18 95.9 95 57.9
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 8.3e-18 94.7 78 66.7
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.0e-17 91.7 80 62.5
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.2e-16 90.9 75 60.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.5e-16 89.4 75 54.7
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.9e-15 86.3 91 51.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.9e-15 86.3 82 50.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-14 84.3 110 49.1
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-14 82.0 81 58.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-12 77.0 100 47.0
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-10 70.9 66 51.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-09 67.4 52 71.2
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 4.5e-08 62.4 86 43.0
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.1e-06 57.8 45 55.6
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 2.5e-06 56.6 49 49.0
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 2.5e-06 56.6 49 49.0
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 9.5e-06 54.7 41 63.4


User provided reference genes

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