Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.5e-273 945.7 496 100.0
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 2.2e-205 719.2 404 94.3
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 5.5e-204 714.5 391 96.2
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.4e-185 651.7 422 82.9
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 4.4e-145 518.8 404 68.1
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 9.9e-145 517.7 391 69.1
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.9e-144 516.2 391 68.8
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 3.5e-142 509.2 391 67.8
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 9.6e-140 501.1 400 65.8
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.8e-138 496.9 338 76.6
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 4.5e-137 492.3 391 65.5
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 6.4e-136 488.4 412 62.9
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 6.4e-136 488.4 391 66.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.4e-135 487.3 338 73.4
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 7.1e-135 485.0 334 74.9
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.8e-133 480.3 376 66.0
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 3.9e-133 479.2 323 74.0
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 8.7e-133 478.0 370 68.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.5e-132 476.5 389 64.5
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 2.5e-132 476.5 397 64.0
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 4.3e-132 475.7 400 63.8
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 5.6e-132 475.3 403 63.8
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.6e-131 473.8 394 64.5
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.4e-130 470.7 394 64.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.8e-130 470.3 338 70.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 1.8e-130 470.3 385 65.5
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.4e-130 469.9 332 71.7
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 6.9e-130 468.4 346 69.4
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 9.0e-130 468.0 345 68.4
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 9.0e-130 468.0 345 68.4
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 2.0e-129 466.8 349 69.1
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.0e-129 466.8 395 64.1
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 2.6e-129 466.5 393 64.1
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.6e-129 466.5 390 63.8
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 7.6e-129 464.9 337 70.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 9.9e-129 464.5 395 63.0
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.3e-128 464.2 372 67.5
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.3e-128 464.2 365 67.1
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.7e-128 463.8 346 68.8
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.9e-128 463.0 314 73.2
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 3.8e-128 462.6 395 62.5
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 3.8e-128 462.6 391 64.5
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.9e-127 460.3 395 62.5
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 5.5e-127 458.8 357 66.4
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 9.3e-127 458.0 331 70.1
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 9.3e-127 458.0 317 72.9
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 2.3e-125 453.4 367 64.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 5.6e-124 448.7 391 62.1
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.3e-123 447.6 370 62.7
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 4.8e-123 445.7 336 66.1
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.1e-122 444.5 336 66.7
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.0e-121 440.3 336 66.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 3.4e-121 439.5 375 61.6
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.4e-121 439.5 376 62.0
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 4.5e-121 439.1 336 66.1
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.0e-120 438.0 340 65.3
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.0e-120 438.0 336 67.3
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 2.9e-120 436.4 383 61.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 2.9e-120 436.4 383 61.4
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 2.9e-120 436.4 337 65.9
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 3.2e-119 433.0 383 61.4
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 3.2e-119 433.0 347 63.1
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 9.3e-119 431.4 336 63.7
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.0e-117 427.9 323 65.6
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 6.7e-117 425.2 379 60.7
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.1e-116 424.5 338 67.2
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.5e-116 424.1 383 60.6
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.5e-116 424.1 394 57.9
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.5e-116 423.3 383 60.3
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.5e-116 423.3 314 69.1
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 9.6e-116 421.4 316 64.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 9.6e-116 421.4 335 63.6
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.3e-115 421.0 308 67.9
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.7e-115 419.5 335 63.6
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 6.3e-115 418.7 327 62.7
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.4e-114 416.8 287 71.4
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 6.9e-114 415.2 337 63.2
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 2.0e-113 413.7 292 71.2
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.6e-113 413.3 306 66.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.0e-112 411.4 326 64.4
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 5.0e-112 409.1 376 58.0
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 3.2e-111 406.4 325 61.5
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 5.5e-111 405.6 347 62.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.2e-110 404.4 407 57.0
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.1e-110 403.7 338 63.0
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 7.9e-110 401.7 410 54.9
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.4e-106 390.2 385 54.8
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.9e-104 383.3 256 75.0
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.8e-104 382.9 306 66.7
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 7.7e-97 358.6 320 61.2
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 2.9e-96 356.7 321 58.3
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.8e-96 356.3 246 71.1
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.0e-93 348.2 228 75.0
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.1e-90 338.2 304 54.3
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.4e-90 337.8 319 58.3
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 5.3e-90 335.9 341 54.8
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.0e-88 331.6 315 52.4
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.1e-86 323.9 296 60.1
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 3.6e-86 323.2 312 54.2
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.7e-83 313.2 320 50.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.9e-80 303.5 311 54.3
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 3.2e-79 300.1 198 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.2e-78 298.1 311 49.8
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 8.3e-75 285.4 271 59.0
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 2.4e-74 283.9 188 75.5
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.2e-73 281.6 250 59.2
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 7.5e-68 262.3 179 73.7
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.1e-66 256.5 228 58.8
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 3.3e-63 246.9 159 78.0
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 2.0e-60 237.7 244 54.9
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.3e-59 235.0 200 62.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.1e-58 231.9 290 43.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.7e-51 206.8 307 43.6
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 1.3e-48 198.4 270 42.6
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.2e-42 177.2 137 65.7
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.6e-41 174.9 289 35.3
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.5e-31 141.0 105 65.7
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 2.1e-30 137.9 233 39.9
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 8.4e-27 125.9 129 52.7
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 5.1e-24 116.7 229 38.9
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.7e-24 115.9 83 75.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.1e-21 109.0 83 71.1
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.8e-13 81.6 62 64.5
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 2.6e-12 77.8 53 62.3
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.0e-08 65.9 46 69.6


User provided reference genes

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