Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.7e-201 703.7 342 100.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 7.0e-190 667.2 342 93.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.1e-179 633.3 347 89.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.4e-161 573.2 342 81.9
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.0e-161 571.6 345 80.6
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 8.6e-140 500.7 297 78.5
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.6e-140 500.7 341 71.8
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 8.6e-140 500.7 289 80.6
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 4.3e-139 498.4 322 73.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 9.5e-139 497.3 301 77.4
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.8e-137 493.0 341 71.3
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 2.4e-137 492.7 293 79.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.1e-137 492.3 346 69.9
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.2e-136 490.3 296 77.4
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.4e-136 488.4 289 79.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.8e-136 488.0 289 78.5
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 5.8e-136 488.0 292 78.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.8e-135 485.3 319 72.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.2e-134 482.3 318 71.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.6e-133 479.9 289 77.2
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.1e-133 479.6 292 76.4
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 4.6e-133 478.4 337 67.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 6.0e-133 478.0 278 77.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 7.8e-133 477.6 292 74.7
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 7.8e-133 477.6 335 69.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.3e-132 476.1 300 75.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 3.0e-132 475.7 298 74.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.0e-132 475.7 339 69.0
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.9e-132 475.3 340 68.8
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 9.6e-131 470.7 280 77.1
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 9.6e-131 470.7 330 70.3
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.6e-130 469.9 318 69.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.1e-130 469.5 318 69.5
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.6e-130 468.8 306 71.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.7e-130 468.4 347 67.7
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.2e-129 464.9 314 70.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 9.9e-128 460.7 282 75.5
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.2e-127 459.5 331 68.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.2e-126 455.7 288 73.6
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.2e-126 455.7 330 66.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.2e-126 455.3 282 74.8
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 5.4e-126 454.9 343 66.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.4e-126 454.9 293 74.1
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.2e-125 453.8 337 65.3
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.5e-125 452.2 330 66.1
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.7e-124 449.9 289 72.3
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 3.9e-124 448.7 296 72.0
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-123 447.2 326 67.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.9e-123 446.4 277 75.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.5e-123 446.0 291 71.5
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.3e-123 445.7 350 64.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 4.3e-123 445.3 267 79.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 5.6e-123 444.9 349 63.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 7.3e-123 444.5 284 69.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.3e-122 443.7 328 66.5
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.1e-122 443.0 307 70.4
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.8e-122 441.8 279 73.1
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 6.2e-122 441.4 316 68.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.2e-122 441.4 316 67.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.4e-121 439.5 296 70.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.1e-121 439.1 296 72.0
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.1e-121 439.1 316 67.7
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 5.3e-121 438.3 291 70.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.9e-121 438.0 338 65.1
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 6.9e-121 438.0 308 67.2
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.5e-120 436.8 285 71.6
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 4.5e-120 435.3 268 73.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 5.8e-120 434.9 326 64.7
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.9e-119 432.6 346 62.4
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.9e-119 431.8 303 69.3
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 4.9e-119 431.8 332 64.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 6.4e-119 431.4 318 64.8
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 8.4e-119 431.0 320 66.6
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.4e-118 428.3 288 68.4
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 9.3e-118 427.6 351 60.4
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.1e-117 426.4 318 65.7
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.0e-117 424.9 273 71.8
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 6.0e-117 424.9 347 60.8
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 7.9e-117 424.5 332 63.3
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 1.3e-116 423.7 295 67.1
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-116 423.7 358 60.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.3e-116 423.7 278 70.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.3e-116 423.7 294 70.1
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.3e-116 422.9 361 61.2
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.3e-116 422.9 282 69.1
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 3.3e-115 419.1 359 59.9
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.1e-113 414.1 289 69.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.8e-113 413.3 290 68.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.2e-112 410.6 309 64.7
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.4e-112 409.1 304 67.4
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.5e-112 408.7 318 61.9
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.5e-112 408.7 330 61.8
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 9.9e-112 407.5 275 69.8
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.7e-111 406.8 323 63.5
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-111 406.8 355 58.0
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.7e-111 406.8 261 71.6
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 2.2e-111 406.4 287 67.9
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.9e-111 406.0 306 65.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.8e-111 405.6 323 61.0
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 6.4e-111 404.8 327 59.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-110 403.7 350 58.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.0e-108 397.5 331 61.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.3e-108 396.4 348 60.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 5.1e-108 395.2 319 60.5
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.7e-108 394.8 323 61.3
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.1e-107 394.0 226 80.1
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.6e-107 391.0 347 56.8
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.6e-106 390.2 331 60.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.1e-105 386.0 333 61.3
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 3.8e-103 379.0 352 55.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.0e-101 371.7 390 51.5
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.8e-100 370.2 332 56.3
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.3e-100 369.8 270 66.7
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.5e-99 366.3 288 63.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.5e-99 366.3 345 56.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 9.7e-99 364.4 290 60.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 4.5e-96 355.5 320 56.6
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.1e-92 342.0 252 65.5
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 6.7e-92 341.7 274 58.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.5e-91 339.7 283 54.4
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 6.3e-90 335.1 286 56.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 3.1e-89 332.8 308 54.9
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 3.1e-89 332.8 308 55.2
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.4e-88 329.3 345 49.9
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.4e-88 329.3 298 57.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-87 326.6 298 56.4
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.4e-84 317.4 304 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.9e-84 315.8 286 54.5
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.7e-84 315.1 246 63.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.2e-82 310.1 388 45.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 8.2e-82 308.1 182 76.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.1e-81 307.8 346 48.8
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.3e-81 305.4 310 53.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.1e-78 297.7 177 78.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 8.0e-77 291.6 199 68.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.8e-74 282.3 294 50.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 8.2e-74 281.6 269 52.8
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 3.1e-73 279.6 265 50.9
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 7.0e-73 278.5 297 46.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.3e-71 274.2 340 44.1
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 7.5e-67 258.5 164 71.3
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.2e-66 256.9 176 67.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-65 254.2 182 67.6
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-65 253.8 182 67.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.1e-65 253.1 218 56.9
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.0e-64 250.4 234 56.0
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.5e-64 249.2 325 45.8
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.7e-63 247.3 176 65.3
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 5.0e-63 245.7 192 59.9
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 6.5e-63 245.4 180 63.3
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 4.2e-62 242.7 177 66.7
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 4.2e-62 242.7 502 32.9
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.0e-59 233.8 174 60.9
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 8.6e-55 218.4 259 42.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.3e-52 210.3 291 38.8
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.2e-50 203.8 351 34.2
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 6.3e-50 202.2 117 76.9
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 4.3e-46 189.5 140 65.0
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.6e-45 187.6 136 65.4
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.8e-44 184.1 186 50.5
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.8e-43 179.1 134 62.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.7e-42 176.4 104 79.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 5.0e-39 166.0 102 73.5
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.5e-38 163.7 104 70.2
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.9e-36 155.2 127 55.1
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.4e-35 153.3 97 69.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.5e-35 152.1 96 69.8
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-34 150.6 186 46.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 3.7e-34 149.8 102 71.6
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 4.1e-33 146.4 138 53.6
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.0e-27 127.5 90 64.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.4e-25 119.4 91 59.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.9e-20 102.1 72 59.7
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.8e-19 99.4 60 66.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 2.9e-18 97.1 60 75.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-14 84.3 50 76.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.7e-13 79.7 51 76.5
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 4.4e-11 73.2 51 70.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.4e-09 68.2 55 58.2
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 7.1e-09 65.9 37 78.4
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.2e-08 65.1 53 58.5


User provided reference genes

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