Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021335.2 Cucumis melo HOM05D000865 ORTHO05D000739 5.9e-130 467.6 250 100.0
CsaV3_6G017230 Cucumis sativus L. HOM05D000865 ORTHO05D034955 2.1e-87 326.2 254 74.4
MELO3C021336.2 Cucumis melo HOM05D000865 ORTHO05D000739 1.2e-66 257.3 252 61.9
TAR633G1600 Trochodendron aralioides HOM05D000865 ORTHO05D000739 5.0e-20 102.4 157 41.4
CiPaw.01G149500 Carya illinoinensis HOM05D000865 ORTHO05D000739 4.7e-18 95.9 152 40.8
TAR636G2581 Trochodendron aralioides HOM05D000865 ORTHO05D000739 1.0e-17 94.7 157 37.6
Cfa015375 Carpinus fangiana HOM05D000865 ORTHO05D000739 1.4e-17 94.4 116 42.2
Potri.010G024200 Populus trichocarpa HOM05D000865 ORTHO05D000739 3.0e-17 93.2 148 41.9
Aqoxy2G03021 Aquilegia oxysepala HOM05D000865 ORTHO05D000739 5.2e-17 92.4 156 38.5
MELO3C021337.2 Cucumis melo HOM05D036525 ORTHO05D034955 6.8e-17 92.0 139 40.3
Manes.15G013300 Manihot esculenta HOM05D000865 ORTHO05D000739 1.5e-16 90.9 158 38.0
CiPaw.02G083700 Carya illinoinensis HOM05D000865 ORTHO05D000739 2.6e-16 90.1 141 44.0
TAR362G0271 Trochodendron aralioides HOM05D000865 ORTHO05D000739 5.7e-16 89.0 157 38.2
Nn4g25898 Nelumbo nucifera HOM05D000865 ORTHO05D000739 7.5e-16 88.6 157 36.9
Sabra05G0032000 Salix brachista HOM05D000865 ORTHO05D000739 9.8e-16 88.2 142 41.5
VMungo1309G0029 Vigna mungo HOM05D000865 ORTHO05D000739 2.8e-15 86.7 154 35.1
Dinv29770 Davidia involucrata HOM05D000865 ORTHO05D000739 3.7e-15 86.3 157 37.6
MELO3C021341.2 Cucumis melo HOM05D000865 ORTHO05D000739 4.8e-15 85.9 143 40.6
Gohir.A12G009950 Gossypium hirsutum HOM05D000865 ORTHO05D000739 4.8e-15 85.9 142 39.4
Gohir.D12G010000 Gossypium hirsutum HOM05D000865 ORTHO05D000739 6.3e-15 85.5 143 39.9
Gorai.008G010000 Gossypium raimondii HOM05D000865 ORTHO05D000739 6.3e-15 85.5 143 39.9
QL03p012685 Quercus lobata HOM05D000865 ORTHO05D000739 6.3e-15 85.5 144 38.2
Sed0013663 Sechium edule HOM05D000865 ORTHO05D000739 1.1e-14 84.7 142 38.7
PSO832G1537 Papaver somniferum HOM05D000865 ORTHO05D000739 3.1e-14 83.2 142 38.0
QL06p008669 Quercus lobata HOM05D000865 ORTHO05D000739 3.1e-14 83.2 142 40.8
Rhsim02G0009700 Rhododendron simsii HOM05D000407 ORTHO05D000739 3.1e-14 83.2 153 35.3
Rhsim02G0010800 Rhododendron simsii HOM05D000407 ORTHO05D000739 4.1e-14 82.8 141 37.6
Peaxi162Scf00534g00013 Petunia axillaris HOM05D000865 ORTHO05D000739 7.0e-14 82.0 152 38.2
Haze_01218 Corylus avellana HOM05D000865 ORTHO05D000739 9.1e-14 81.6 145 41.4
PSO591G0270 Papaver somniferum HOM05D000865 ORTHO05D000739 9.1e-14 81.6 141 36.9
vmacro15241 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 1.2e-13 81.3 141 37.6
CAN.G1971.1 Capsicum annuum HOM05D000865 ORTHO05D000739 1.6e-13 80.9 156 37.8
ClCG06G005200 Citrullus lanatus HOM05D000865 ORTHO05D000739 2.7e-13 80.1 140 39.3
Duzib151G1190 Durio zibethinus HOM05D000865 ORTHO05D000739 2.7e-13 80.1 138 36.2
PGR004G0121 Punica granatum HOM05D000865 ORTHO05D000739 2.7e-13 80.1 144 36.8
vmacro15240 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 2.7e-13 80.1 137 38.0
Nitab4.5_0000960g0190 Nicotiana tabacum HOM05D000865 ORTHO05D000739 3.5e-13 79.7 143 38.5
Ciclev10005548m.g Citrus clementina HOM05D000865 ORTHO05D000739 4.5e-13 79.3 145 35.9
Potri.008G209800 Populus trichocarpa HOM05D000865 ORTHO05D000739 4.5e-13 79.3 139 38.8
Duzib052G0438 Durio zibethinus HOM05D000865 ORTHO05D000739 5.9e-13 79.0 158 34.2
Duzib212G0059 Durio zibethinus HOM05D000865 ORTHO05D000739 1.0e-12 78.2 136 36.8
Glyma.07G248600 Glycine max HOM05D000865 ORTHO05D000739 1.3e-12 77.8 140 36.4
Rhsim02G0009800 Rhododendron simsii HOM05D000865 ORTHO05D000739 1.3e-12 77.8 142 38.7
Ciclev10005259m.g Citrus clementina HOM05D000865 ORTHO05D000739 2.3e-12 77.0 142 34.5
Potri.005G026700 Populus trichocarpa HOM05D000865 ORTHO05D000739 2.9e-12 76.6 163 37.4
Cc00_g10550 Coffea canephora HOM05D000865 ORTHO05D000739 3.8e-12 76.3 143 36.4
Sed0006577 Sechium edule HOM05D000865 ORTHO05D000739 3.8e-12 76.3 148 35.8
CANSAT25G3656 Cannabis sativa HOM05D000865 ORTHO05D000739 5.0e-12 75.9 147 36.7
Cfa006615 Carpinus fangiana HOM05D000865 ORTHO05D000739 5.0e-12 75.9 142 33.8
CiPaw.08G101400 Carya illinoinensis HOM05D000865 ORTHO05D000739 5.0e-12 75.9 155 39.4
Haze_04160 Corylus avellana HOM05D000865 ORTHO05D000739 6.5e-12 75.5 142 34.5
Oeu024979.1 Olea europaea HOM05D000865 ORTHO05D000739 6.5e-12 75.5 149 36.9
Phvul.009G247100 Phaseolus vulgaris HOM05D000865 ORTHO05D000739 6.5e-12 75.5 129 37.2
Rhsim05G0141500 Rhododendron simsii HOM05D000865 ORTHO05D000739 6.5e-12 75.5 139 37.4
Cfa015377 Carpinus fangiana HOM05D000865 ORTHO05D000739 1.1e-11 74.7 118 40.7
Gorai.006G263800 Gossypium raimondii HOM05D000865 ORTHO05D000739 1.1e-11 74.7 139 36.7
Lj4g0012125 Lotus japonicus HOM05D000865 ORTHO05D000739 1.1e-11 74.7 139 33.1
Migut.N00094 Erythranthe guttata HOM05D000865 ORTHO05D000739 1.5e-11 74.3 146 34.9
Gohir.D09G240700 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.5e-11 74.3 139 36.0
MELO3C015314.2 Cucumis melo HOM05D000865 ORTHO05D000739 1.9e-11 73.9 108 38.9
DCAR_027081 Daucus carota HOM05D000865 ORTHO05D000739 1.9e-11 73.9 141 33.3
Gohir.A09G239900 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.9e-11 73.9 139 36.7
Gohir.A11G295000 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.9e-11 73.9 165 34.5
CiPaw.08G162900 Carya illinoinensis HOM05D000865 ORTHO05D000739 2.5e-11 73.6 142 33.1
Nitab4.5_0000191g0040 Nicotiana tabacum HOM05D000865 ORTHO05D000739 2.5e-11 73.6 132 37.9
Lj6g0011988 Lotus japonicus HOM05D000865 ORTHO05D000739 3.2e-11 73.2 160 32.5
Lalb_Chr15g0083531 Lupinus albus HOM05D000865 ORTHO05D000739 3.2e-11 73.2 141 34.0
Psat1g152800 Pisum sativum HOM05D000865 ORTHO05D000739 3.2e-11 73.2 173 30.6
Rhsim02G0010900 Rhododendron simsii HOM05D000865 ORTHO05D000739 3.2e-11 73.2 147 35.4
TPR.G3220 Trifolium pratense HOM05D000865 ORTHO05D000739 3.2e-11 73.2 142 33.1
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 4.2e-11 72.8 154 34.4
CsaV3_1G038880 Cucumis sativus L. HOM05D000865 ORTHO05D000739 4.2e-11 72.8 149 32.9
TWI12G0020 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 4.2e-11 72.8 144 36.1
Ca_21529_v3 Cicer arietinum L. HOM05D000865 ORTHO05D000739 5.5e-11 72.4 139 30.9
ClCG03G017040 Citrullus lanatus HOM05D000865 ORTHO05D000739 5.5e-11 72.4 107 39.3
Glyma.09G045700 Glycine max HOM05D000865 ORTHO05D000739 5.5e-11 72.4 141 32.6
Migut.G00172 Erythranthe guttata HOM05D000865 ORTHO05D000739 7.2e-11 72.0 108 41.7
Glyma.15G152900 Glycine max HOM05D000865 ORTHO05D000739 7.2e-11 72.0 141 32.6
HanXRQChr03g0080791 Helianthus annuus HOM05D000865 ORTHO05D000739 7.2e-11 72.0 151 34.4
HanXRQChr03g0080821 Helianthus annuus HOM05D000865 ORTHO05D000739 7.2e-11 72.0 140 34.3
SalBow5G3436 Salvia bowleyana HOM05D000865 ORTHO05D000739 7.2e-11 72.0 107 43.0
TPR.G26844 Trifolium pratense HOM05D000865 ORTHO05D000739 7.2e-11 72.0 142 33.8
Psat4g027040 Pisum sativum HOM05D000865 ORTHO05D000739 9.5e-11 71.6 138 30.4
Sc17g0003320 Simmondsia chinensis HOM05D000865 ORTHO05D000739 9.5e-11 71.6 145 35.9
MD12G1216300 Malus domestica HOM05D000865 ORTHO05D000739 1.2e-10 71.2 147 36.1
vmacro15239 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 1.2e-10 71.2 142 36.6
GSVIVG01031119001 Vitis vinifera HOM05D000865 ORTHO05D000739 1.2e-10 71.2 141 35.5
Gohir.D11G309700 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.6e-10 70.9 169 34.9
Gorai.007G341700 Gossypium raimondii HOM05D000865 ORTHO05D000739 1.6e-10 70.9 169 34.9
Lsat_1_v5_gn_2_72960 Lactuca sativa HOM05D000865 ORTHO05D000739 2.1e-10 70.5 141 34.0
AUR62018083 Chenopodium quinoa HOM05D000865 ORTHO05D000739 2.8e-10 70.1 145 33.1
BcaC09g50267 Brassica carinata HOM05D000865 ORTHO05D010535 3.6e-10 69.7 154 29.9
C01p27150 Brassica napus HOM05D000865 ORTHO05D010535 3.6e-10 69.7 154 29.9
CAN.G1652.15 Capsicum annuum HOM05D000865 ORTHO05D000739 3.6e-10 69.7 142 33.8
Ca_01948_v3 Cicer arietinum L. HOM05D000865 ORTHO05D000739 3.6e-10 69.7 142 32.4
Phvul.003G104400 Phaseolus vulgaris HOM05D000865 ORTHO05D000739 3.6e-10 69.7 144 37.5
SGA_v2.0_scaffold67G22660 Striga asiatica HOM05D000865 ORTHO05D000739 3.6e-10 69.7 140 33.6
BolC1t02661H Brassica oleracea HOM05D000865 ORTHO05D010535 4.7e-10 69.3 154 29.9
Nn3g21412 Nelumbo nucifera HOM05D000865 ORTHO05D000739 4.7e-10 69.3 144 34.7
CANSAT54G1245 Cannabis sativa HOM05D000865 ORTHO05D000739 6.1e-10 68.9 143 35.0
CiPaw.07G020300 Carya illinoinensis HOM05D000865 ORTHO05D000739 6.1e-10 68.9 142 33.1
Actinidia25058 Actinidia chinensis HOM05D000865 ORTHO05D000739 8.0e-10 68.6 152 34.2
HanXRQChr08g0212611 Helianthus annuus HOM05D000865 ORTHO05D000739 8.0e-10 68.6 136 29.4
Lsat_1_v5_gn_5_53581 Lactuca sativa HOM05D000865 ORTHO05D000739 8.0e-10 68.6 138 34.1
Manes.08G119200 Manihot esculenta HOM05D000865 ORTHO05D000739 8.0e-10 68.6 144 36.1
Actinidia00029 Actinidia chinensis HOM05D000865 ORTHO05D000739 1.0e-09 68.2 148 33.1
Psat4g027080 Pisum sativum HOM05D000865 ORTHO05D000739 1.0e-09 68.2 146 29.5
QL03p021409 Quercus lobata HOM05D000865 ORTHO05D000739 1.0e-09 68.2 147 32.7
Sp7g14020 Schrenkiella parvula HOM05D000865 ORTHO05D010535 1.0e-09 68.2 155 32.9
Lsat_1_v5_gn_6_15121 Lactuca sativa HOM05D000865 ORTHO05D000739 1.8e-09 67.4 188 30.9
Medtr2g436900 Medicago truncatula HOM05D000865 ORTHO05D000739 1.8e-09 67.4 185 28.6
Peaxi162Scf00849g00012 Petunia axillaris HOM05D000865 ORTHO05D000739 1.8e-09 67.4 146 32.9
QL03p070516 Quercus lobata HOM05D000053 ORTHO05D000035 1.8e-09 67.4 136 32.4
Sopen01g042930 Solanum pennellii HOM05D000865 ORTHO05D000739 1.8e-09 67.4 141 33.3
PGSC0003DMG400024703 Solanum tuberosum HOM05D000865 ORTHO05D000739 1.8e-09 67.4 141 34.0
BcaC06g33430 Brassica carinata HOM05D000865 ORTHO05D010535 2.3e-09 67.0 148 31.8
BolC7t45257H Brassica oleracea HOM05D000865 ORTHO05D010535 2.3e-09 67.0 148 31.8
Solyc01g099370.3 Solanum lycopersicum HOM05D000865 ORTHO05D000739 2.3e-09 67.0 141 33.3
C07p47340 Brassica napus HOM05D000865 ORTHO05D010535 3.0e-09 66.6 148 31.8
Eucgr.H03902 Eucalyptus grandis HOM05D000865 ORTHO05D000739 3.0e-09 66.6 147 32.0
Thhalv10026991m.g Eutrema salsugineum HOM05D000865 ORTHO05D000739 3.0e-09 66.6 145 31.7
HanXRQChr04g0122401 Helianthus annuus HOM05D000865 ORTHO05D000739 3.0e-09 66.6 144 31.9
AL5G45560 Arabidopsis lyrata HOM05D000865 ORTHO05D000739 4.0e-09 66.2 144 38.2
MELO3C004229.2 Cucumis melo HOM05D000865 ORTHO05D000739 4.0e-09 66.2 143 31.5
HanXRQChr17g0566961 Helianthus annuus HOM05D000865 ORTHO05D000739 4.0e-09 66.2 142 35.2
DCAR_024563 Daucus carota HOM05D000865 ORTHO05D000739 5.2e-09 65.9 141 31.2
Oeu051839.1 Olea europaea HOM05D000865 ORTHO05D000739 5.2e-09 65.9 159 32.1
QL12p030197 Quercus lobata HOM05D000865 ORTHO05D000739 5.2e-09 65.9 141 34.0
TWI12G0843 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 5.2e-09 65.9 142 33.1
A03p49270 Brassica napus HOM05D000865 ORTHO05D010535 6.8e-09 65.5 154 30.5
ECA240G0693 Erigeron canadensis HOM05D000865 ORTHO05D000739 6.8e-09 65.5 142 31.7
Lalb_Chr18g0051731 Lupinus albus HOM05D000865 ORTHO05D000739 6.8e-09 65.5 141 31.2
Sed0020392 Sechium edule HOM05D000865 ORTHO05D000739 6.8e-09 65.5 118 33.9
BcaC06g32956 Brassica carinata HOM05D000865 ORTHO05D010535 8.8e-09 65.1 151 29.8
BraA03t14028Z Brassica rapa HOM05D000865 ORTHO05D010535 8.8e-09 65.1 156 31.4
ClCG02G015520 Citrullus lanatus HOM05D000865 ORTHO05D000739 8.8e-09 65.1 143 31.5
HanXRQChr12g0364471 Helianthus annuus HOM05D000865 ORTHO05D000739 8.8e-09 65.1 142 31.0
QL03p021168 Quercus lobata HOM05D000865 ORTHO05D000739 8.8e-09 65.1 143 34.3
DCAR_030533 Daucus carota HOM05D000865 ORTHO05D000739 1.2e-08 64.7 164 33.5
Thhalv10025151m.g Eutrema salsugineum HOM05D000865 ORTHO05D010535 1.2e-08 64.7 157 29.9
Carub.0007s2593 Capsella rubella HOM05D000865 ORTHO05D000739 1.5e-08 64.3 108 36.1
QL12p030209 Quercus lobata HOM05D000865 ORTHO05D000739 1.5e-08 64.3 141 32.6
MBI19_g00436_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 2.0e-08 63.9 165 32.1
SGA_v2.0_scaffold91G27990 Striga asiatica HOM05D000865 ORTHO05D000739 2.0e-08 63.9 136 33.1
MD04G1202300 Malus domestica HOM05D000865 ORTHO05D000739 2.6e-08 63.5 147 34.7
Potri.013G018600 Populus trichocarpa HOM05D000865 ORTHO05D000739 2.6e-08 63.5 137 33.6
TWI12G0999 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 2.6e-08 63.5 137 34.3
HanXRQChr15g0486451 Helianthus annuus HOM05D000865 ORTHO05D000739 3.4e-08 63.2 108 37.0
ATR0706G083 Amborella trichopoda HOM05D000865 ORTHO05D000739 7.5e-08 62.0 139 30.2
HanXRQChr08g0212211 Helianthus annuus HOM05D000865 ORTHO05D000739 7.5e-08 62.0 146 29.5
Nitab4.5_0002344g0080 Nicotiana tabacum HOM05D000865 ORTHO05D000739 7.5e-08 62.0 144 33.3
Sc09g0003020 Simmondsia chinensis HOM05D000865 ORTHO05D000739 7.5e-08 62.0 104 41.3
ECA233G5406 Erigeron canadensis HOM05D000865 ORTHO05D000739 9.8e-08 61.6 118 33.9
HanXRQChr03g0060971 Helianthus annuus HOM05D000865 ORTHO05D000739 9.8e-08 61.6 186 30.1
QL12p026729 Quercus lobata HOM05D000865 ORTHO05D000739 9.8e-08 61.6 141 32.6
MBI19_g13126_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 1.3e-07 61.2 162 33.3
MD13G1169800 Malus domestica HOM05D000865 ORTHO05D000739 1.3e-07 61.2 143 32.9
MD16G1170900 Malus domestica HOM05D000865 ORTHO05D000739 1.3e-07 61.2 143 32.2
QL03p021194 Quercus lobata HOM05D000865 ORTHO05D000739 1.3e-07 61.2 143 32.2
Sp7g14030 Schrenkiella parvula HOM05D000865 ORTHO05D010535 1.3e-07 61.2 148 31.1
CsaV3_2G006560 Cucumis sativus L. HOM05D000865 ORTHO05D000739 2.2e-07 60.5 144 30.6
CsaV3_6G017250 Cucumis sativus L. HOM05D036525 ORTHO05D034955 2.8e-07 60.1 87 40.2
SalBow2G1137 Salvia bowleyana HOM05D000865 ORTHO05D000739 2.8e-07 60.1 212 27.4
Carub.0001s0839 Capsella rubella HOM05D000865 ORTHO05D000739 3.7e-07 59.7 149 32.2
Peaxi162Scf00071g00066 Petunia axillaris HOM05D000865 ORTHO05D000739 3.7e-07 59.7 143 32.2
BraA08t33182Z Brassica rapa HOM05D000865 ORTHO05D000739 4.9e-07 59.3 155 29.0
Dinv44389 Davidia involucrata HOM05D000865 ORTHO05D000739 4.9e-07 59.3 68 41.2
MD02G1019900 Malus domestica HOM05D000865 ORTHO05D000739 4.9e-07 59.3 143 32.2
ECA233G4973 Erigeron canadensis HOM05D000865 ORTHO05D000739 6.3e-07 58.9 117 34.2
Eucgr.L02128 Eucalyptus grandis HOM05D000865 ORTHO05D000739 6.3e-07 58.9 146 33.6
PGSC0003DMG400004506 Solanum tuberosum HOM05D000865 ORTHO05D000739 6.3e-07 58.9 143 32.9
THA.LOC104817502 Tarenaya hassleriana HOM05D000865 ORTHO05D000739 6.3e-07 58.9 142 33.1
PGR083G0395 Punica granatum HOM05D000865 ORTHO05D000739 8.3e-07 58.5 107 34.6
Eucgr.B01929 Eucalyptus grandis HOM05D000865 ORTHO05D000739 1.1e-06 58.2 146 32.9
A08p11920 Brassica napus HOM05D000865 ORTHO05D000739 1.4e-06 57.8 155 29.0
CARHR290180 Cardamine hirsuta HOM05D000865 ORTHO05D010535 1.4e-06 57.8 128 33.6
Cc00_g10490 Coffea canephora HOM05D000865 ORTHO05D000739 1.8e-06 57.4 161 28.6
ECA233G2183 Erigeron canadensis HOM05D000865 ORTHO05D000739 1.8e-06 57.4 146 34.2
RcHm_v2.0_Chr3g0455361 Rosa chinensis HOM05D000865 ORTHO05D000739 1.8e-06 57.4 141 30.5
Solyc08g028990.1 Solanum lycopersicum HOM05D000865 ORTHO05D000739 3.1e-06 56.6 143 31.5
Zm00001eb142200 Zea mays HOM05D000865 ORTHO05D000739 3.1e-06 56.6 105 34.3
Gohir.D11G309750 Gossypium hirsutum HOM05D000865 ORTHO05D000739 4.1e-06 56.2 141 36.2
Gorai.007G341800 Gossypium raimondii HOM05D000865 ORTHO05D000739 4.1e-06 56.2 141 36.2
Os01g0934100 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 4.1e-06 56.2 145 30.3
Nitab4.5_0002344g0050 Nicotiana tabacum HOM05D000865 ORTHO05D000739 5.4e-06 55.8 143 29.4
Nitab4.5_0009303g0020 Nicotiana tabacum HOM05D000865 ORTHO05D000739 7.0e-06 55.5 143 31.5
Sopen08g009720 Solanum pennellii HOM05D000865 ORTHO05D000739 7.0e-06 55.5 143 30.8
Os05g0149100 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 9.2e-06 55.1 122 31.1


User provided reference genes

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