Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021286.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.9e-45 184.1 93 100.0
ClCG06G004770 Citrullus lanatus HOM05D000786 ORTHO05D000779 6.8e-31 137.1 101 77.2
CsaV3_6G022560 Cucumis sativus L. HOM05D000786 ORTHO05D000779 4.1e-28 127.9 101 73.3
Sed0026655 Sechium edule HOM05D000786 ORTHO05D000779 8.7e-10 67.0 65 49.2
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 1.5e-09 66.2 78 43.6
Potri.010G140800 Populus trichocarpa HOM05D000786 ORTHO05D000779 1.5e-09 66.2 45 66.7
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 9.6e-09 63.5 76 44.7
Duzib212G0738 Durio zibethinus HOM05D015449 ORTHO05D017881 9.6e-09 63.5 78 47.4
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 9.6e-09 63.5 69 47.8
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 9.6e-09 63.5 72 45.8
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.3e-08 63.2 63 46.0
THA.LOC104817471 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 1.3e-08 63.2 91 40.7
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 1.6e-08 62.8 99 37.4
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.1e-08 62.4 78 41.0
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 2.8e-08 62.0 69 46.4
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 2.8e-08 62.0 55 50.9
GSVIVG01035043001 Vitis vinifera HOM05D000786 ORTHO05D000779 2.8e-08 62.0 52 57.7
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 3.6e-08 61.6 53 56.6
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 3.6e-08 61.6 63 46.0
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 3.6e-08 61.6 69 46.4
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 4.8e-08 61.2 71 42.3
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 4.8e-08 61.2 42 64.3
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 4.8e-08 61.2 57 45.6
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 8.1e-08 60.5 66 48.5
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 8.1e-08 60.5 91 38.5
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 8.1e-08 60.5 66 43.9
Eucgr.A02612 Eucalyptus grandis HOM05D000786 ORTHO05D000779 1.1e-07 60.1 63 41.3
Thecc.04G295200 Theobroma cacao HOM05D015449 ORTHO05D017881 1.1e-07 60.1 44 63.6
Lsat_1_v5_gn_9_25421 Lactuca sativa HOM05D000786 ORTHO05D000779 1.4e-07 59.7 93 38.7
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 1.4e-07 59.7 45 57.8
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 1.8e-07 59.3 80 42.5
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 1.8e-07 59.3 101 34.7
HanXRQChr01g0000881 Helianthus annuus HOM05D000786 ORTHO05D000779 1.8e-07 59.3 94 39.4
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 1.8e-07 59.3 91 39.6
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 1.8e-07 59.3 45 53.3
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 2.4e-07 58.9 64 43.8
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 2.4e-07 58.9 58 48.3
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 3.1e-07 58.5 45 53.3
Prupe.1G125500 Prunus persica HOM05D039578 ORTHO05D035700 3.1e-07 58.5 50 54.0
Sc13g0006300 Simmondsia chinensis HOM05D000786 ORTHO05D000779 3.1e-07 58.5 61 49.2
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 4.0e-07 58.2 93 40.9
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 4.0e-07 58.2 62 45.2
RcHm_v2.0_Chr4g0424301 Rosa chinensis HOM05D039578 ORTHO05D035700 4.0e-07 58.2 50 54.0
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 4.0e-07 58.2 42 64.3
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 5.3e-07 57.8 98 36.7
CsaV3_2G011280 Cucumis sativus L. HOM05D000786 ORTHO05D000779 5.3e-07 57.8 78 39.7
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 5.3e-07 57.8 45 55.6
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 5.3e-07 57.8 94 40.4
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 5.3e-07 57.8 80 36.2
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 5.3e-07 57.8 95 37.9
Cc03_g01160 Coffea canephora HOM05D000786 ORTHO05D000779 6.9e-07 57.4 77 40.3
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 6.9e-07 57.4 70 40.0
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 6.9e-07 57.4 42 57.1
Atru.chr4.2955 Acer truncatum HOM05D000786 ORTHO05D000779 9.0e-07 57.0 39 64.1
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 9.0e-07 57.0 94 40.4
Manes.03G201501 Manihot esculenta HOM05D000786 ORTHO05D000779 9.0e-07 57.0 61 44.3
Os05g0356800 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 9.0e-07 57.0 42 59.5
Zm00001eb111850 Zea mays HOM05D000786 ORTHO05D000779 9.0e-07 57.0 66 48.5
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 9.0e-07 57.0 42 57.1
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 1.2e-06 56.6 43 53.5
Cpa.g.sc9.97 Carica papaya HOM05D000786 ORTHO05D000779 1.2e-06 56.6 45 53.3
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 1.2e-06 56.6 73 38.4
Duzib177G0463 Durio zibethinus HOM05D000786 ORTHO05D000779 1.2e-06 56.6 51 49.0
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.2e-06 56.6 51 49.0
Zm00001eb285950 Zea mays HOM05D000786 ORTHO05D000779 1.2e-06 56.6 42 59.5
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.5e-06 56.2 45 53.3
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 1.5e-06 56.2 94 38.3
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 1.5e-06 56.2 72 41.7
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.5e-06 56.2 81 37.0
C04p00400 Brassica napus HOM05D000786 ORTHO05D000779 2.0e-06 55.8 98 36.7
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 2.0e-06 55.8 72 44.4
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 2.0e-06 55.8 50 46.0
COL.COLO4_34670 Corchorus olitorius HOM05D015449 ORTHO05D017881 2.0e-06 55.8 51 56.9
Lj5g0012143 Lotus japonicus HOM05D000786 ORTHO05D000779 2.0e-06 55.8 42 57.1
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 2.6e-06 55.5 50 52.0
Carub.0003s0508 Capsella rubella HOM05D000786 ORTHO05D000779 2.6e-06 55.5 68 41.2
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 2.6e-06 55.5 87 36.8
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.6e-06 55.5 45 53.3
Nn4g25661 Nelumbo nucifera HOM05D000786 ORTHO05D000779 2.6e-06 55.5 42 54.8
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 2.6e-06 55.5 45 53.3
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 3.4e-06 55.1 73 39.7
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 3.4e-06 55.1 58 48.3
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.4e-06 55.1 52 50.0
Thecc.05G320600 Theobroma cacao HOM05D000786 ORTHO05D000779 3.4e-06 55.1 43 53.5
TAR383G0541 Trochodendron aralioides HOM05D000786 ORTHO05D000779 3.4e-06 55.1 80 36.2
CARHR142870 Cardamine hirsuta HOM05D000786 ORTHO05D000779 4.4e-06 54.7 41 53.7
Thhalv10021773m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 4.4e-06 54.7 52 40.4
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 4.4e-06 54.7 44 56.8
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 4.4e-06 54.7 43 53.5
BolC4t21685H Brassica oleracea HOM05D000786 ORTHO05D000779 5.8e-06 54.3 91 36.3
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 5.8e-06 54.3 39 61.5
Haze_25937 Corylus avellana HOM05D000786 ORTHO05D000779 5.8e-06 54.3 88 34.1
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 5.8e-06 54.3 45 51.1
Eucgr.H01070 Eucalyptus grandis HOM05D000786 ORTHO05D000779 5.8e-06 54.3 45 48.9
Sabra10G0108800 Salix brachista HOM05D000786 ORTHO05D000779 5.8e-06 54.3 39 59.0
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 7.6e-06 53.9 91 36.3
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 7.6e-06 53.9 91 36.3
Gohir.D08G223500 Gossypium hirsutum HOM05D000786 ORTHO05D000779 7.6e-06 53.9 50 46.0
Gorai.004G237400 Gossypium raimondii HOM05D000786 ORTHO05D000779 7.6e-06 53.9 50 46.0
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 7.6e-06 53.9 77 39.0
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 7.6e-06 53.9 78 30.8
Thecc.06G114900 Theobroma cacao HOM05D000786 ORTHO05D000779 7.6e-06 53.9 94 34.0
TAR624G0578 Trochodendron aralioides HOM05D000786 ORTHO05D000779 7.6e-06 53.9 89 32.6
FvH4_4g19290 Fragaria vesca HOM05D039578 ORTHO05D035700 9.9e-06 53.5 52 50.0
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 9.9e-06 53.5 91 35.2


User provided reference genes

Program Settings