Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 4.0e-139 498.0 244 100.0
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 3.2e-120 435.3 235 88.5
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 1.7e-118 429.5 235 89.8
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 1.3e-110 403.3 229 83.8
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 6.9e-83 311.2 209 70.3
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 4.2e-80 302.0 211 68.2
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 5.5e-80 301.6 223 65.0
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 1.8e-78 296.6 216 66.7
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 3.9e-78 295.4 211 66.4
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 3.9e-78 295.4 212 64.6
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 8.8e-78 294.3 219 61.6
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 1.1e-77 293.9 214 65.9
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 1.9e-77 293.1 213 64.3
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 5.7e-77 291.6 218 62.8
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 7.4e-77 291.2 210 65.2
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 1.3e-76 290.4 212 64.6
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 1.3e-76 290.4 228 64.5
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 4.8e-76 288.5 210 64.8
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 6.3e-76 288.1 218 64.2
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 1.1e-75 287.3 215 64.2
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.4e-75 287.0 215 62.3
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 1.4e-75 287.0 210 64.3
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.4e-75 287.0 215 61.9
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 2.4e-75 286.2 209 63.6
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 3.1e-75 285.8 212 65.1
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 3.1e-75 285.8 211 62.6
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 4.1e-75 285.4 233 60.1
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 5.3e-75 285.0 210 64.8
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 5.3e-75 285.0 211 65.4
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 5.3e-75 285.0 221 62.4
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 5.3e-75 285.0 209 63.2
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 9.1e-75 284.3 213 60.6
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 9.1e-75 284.3 211 62.1
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 2.0e-74 283.1 209 63.2
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 4.5e-74 282.0 212 62.3
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 4.5e-74 282.0 221 61.5
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 5.9e-74 281.6 214 62.6
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 5.9e-74 281.6 221 62.0
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 7.7e-74 281.2 215 60.9
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 7.7e-74 281.2 228 59.6
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.0e-73 280.8 211 62.1
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 2.2e-73 279.6 209 63.2
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 2.9e-73 279.3 211 62.6
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 5.0e-73 278.5 210 61.9
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 6.5e-73 278.1 213 61.5
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 8.5e-73 277.7 210 63.3
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 1.1e-72 277.3 211 62.1
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 2.5e-72 276.2 211 63.0
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 3.2e-72 275.8 228 57.9
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 5.5e-72 275.0 212 60.8
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 5.5e-72 275.0 215 60.5
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 5.5e-72 275.0 225 58.7
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 5.5e-72 275.0 213 62.4
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 9.4e-72 274.2 209 60.8
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 1.6e-71 273.5 213 59.2
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.6e-71 273.5 214 59.8
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 3.6e-71 272.3 213 62.4
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 2.3e-70 269.6 209 60.8
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 2.3e-70 269.6 209 60.8
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 3.0e-70 269.2 188 68.6
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 3.9e-70 268.9 213 58.7
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 5.1e-70 268.5 211 59.7
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 6.7e-70 268.1 211 60.2
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 6.7e-70 268.1 208 61.1
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 8.8e-70 267.7 209 60.8
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 1.5e-69 266.9 229 57.6
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 2.0e-69 266.5 211 58.8
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 2.0e-69 266.5 211 58.8
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 5.7e-69 265.0 210 59.0
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 7.4e-69 264.6 216 56.9
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 1.3e-68 263.8 209 58.9
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 2.2e-68 263.1 208 59.1
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 3.7e-68 262.3 211 56.9
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.1e-67 260.8 211 58.3
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 1.8e-67 260.0 211 57.8
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 9.1e-67 257.7 201 61.2
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 1.2e-66 257.3 209 59.3
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 3.4e-66 255.8 211 57.3
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 4.5e-66 255.4 211 56.9
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 4.5e-66 255.4 215 56.3
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 5.9e-66 255.0 211 57.3
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 5.9e-66 255.0 211 57.3
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 5.9e-66 255.0 211 57.3
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 1.0e-65 254.2 207 58.9
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 1.3e-65 253.8 211 56.9
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 5.5e-64 248.4 216 55.1
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.6e-63 246.9 197 61.4
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 1.0e-62 244.2 210 53.8
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 1.5e-61 240.4 211 53.1
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 3.3e-61 239.2 210 55.2
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 5.7e-61 238.4 266 45.9
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 5.3e-59 231.9 216 49.5
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 4.5e-58 228.8 211 53.1
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.3e-57 227.3 173 61.3
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 5.0e-57 225.3 171 64.9
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 5.0e-57 225.3 216 51.4
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.5e-56 223.8 171 64.3
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 1.9e-56 223.4 210 51.9
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 1.8e-54 216.9 214 50.5
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 3.0e-54 216.1 241 46.5
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 2.2e-52 209.9 174 59.8
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 8.2e-52 208.0 215 48.4
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.1e-51 207.6 153 64.7
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 7.7e-50 201.4 213 46.0
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 3.2e-48 196.1 211 46.9
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 7.2e-48 194.9 208 49.5
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.2e-47 194.1 206 47.1
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 3.6e-47 192.6 173 52.0
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 4.0e-46 189.1 219 42.0
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 7.5e-45 184.9 154 60.4
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 7.5e-45 184.9 158 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 1.8e-43 180.3 217 42.4
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 7.7e-42 174.9 216 42.6
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 4.7e-39 165.6 165 51.5
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 1.4e-38 164.1 135 57.8
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 7.5e-37 158.3 159 51.6
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 3.6e-31 139.4 112 59.8
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 6.0e-26 122.1 225 31.1
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 2.8e-23 113.2 86 62.8
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.4e-22 110.9 131 45.0
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 1.4e-19 100.9 220 32.3
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 2.4e-19 100.1 114 46.5
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.9e-08 63.9 58 53.4
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 2.5e-08 63.5 47 63.8
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 5.6e-08 62.4 43 58.1
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 9.5e-08 61.6 58 50.0
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 1.6e-07 60.8 65 47.7
SMO203G0094 Selaginella moellendorffii HOM05D002740 ORTHO05D003126 3.1e-06 56.6 200 26.0


User provided reference genes

Program Settings