Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 3.8e-85 318.2 165 100.0
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.8e-50 203.0 111 99.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.2e-48 196.1 111 94.6
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 4.9e-48 194.9 111 93.7
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 8.3e-48 194.1 128 85.9
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 2.4e-47 192.6 111 91.9
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 3.2e-47 192.2 111 92.8
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 5.4e-47 191.4 111 91.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 3.5e-46 188.7 111 90.1
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 3.5e-46 188.7 109 91.7
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 7.8e-46 187.6 111 91.0
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 1.3e-45 186.8 111 90.1
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.7e-45 186.4 111 90.1
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.7e-45 186.4 111 89.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 2.3e-45 186.0 111 89.2
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.0e-45 185.7 111 89.2
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.0e-45 185.7 111 90.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 3.0e-45 185.7 111 90.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 3.9e-45 185.3 112 90.2
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 8.6e-45 184.1 111 87.4
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 8.6e-45 184.1 111 87.4
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.1e-44 183.7 111 89.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.1e-44 183.7 111 89.2
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.5e-44 183.3 111 88.3
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 4.3e-44 181.8 111 89.2
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 4.3e-44 181.8 111 88.3
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.3e-44 181.8 112 90.2
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.3e-44 181.0 111 89.2
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.3e-44 181.0 111 89.2
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.3e-44 181.0 111 89.2
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 7.3e-44 181.0 110 89.1
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 7.3e-44 181.0 111 88.3
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 9.5e-44 180.6 110 89.1
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 9.5e-44 180.6 108 88.9
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 9.5e-44 180.6 111 87.4
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.2e-43 180.3 111 88.3
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.2e-43 180.3 111 88.3
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.2e-43 180.3 111 87.4
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 2.1e-43 179.5 111 86.5
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.8e-43 179.1 111 88.3
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.8e-43 179.1 111 85.6
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 3.6e-43 178.7 112 87.5
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.6e-43 178.7 111 87.4
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 4.7e-43 178.3 110 87.3
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.7e-43 178.3 111 87.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 6.2e-43 177.9 111 87.4
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 6.2e-43 177.9 107 90.7
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 8.1e-43 177.6 112 87.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 8.1e-43 177.6 111 87.4
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 8.1e-43 177.6 111 87.4
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.1e-42 177.2 111 86.5
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.1e-42 177.2 111 87.4
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.8e-42 176.4 111 86.5
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.3e-42 176.0 112 87.5
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.1e-42 175.6 111 87.4
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 4.0e-42 175.3 111 83.8
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 4.0e-42 175.3 112 87.5
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 5.2e-42 174.9 111 86.5
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 6.8e-42 174.5 108 86.1
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.9e-42 174.1 111 84.7
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 8.9e-42 174.1 112 86.6
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.2e-41 173.7 133 74.4
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.5e-41 173.3 112 86.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.5e-41 173.3 111 84.7
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 3.4e-41 172.2 111 84.7
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.8e-41 171.4 112 86.6
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.6e-41 171.0 111 85.6
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.6e-41 171.0 111 85.6
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.7e-40 169.9 108 86.1
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.9e-40 169.1 112 83.9
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 2.9e-40 169.1 111 84.7
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.9e-40 169.1 111 83.8
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 4.9e-40 168.3 109 83.5
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.9e-40 168.3 109 83.5
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.9e-40 168.3 109 83.5
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 4.9e-40 168.3 109 83.5
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 4.9e-40 168.3 111 82.0
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 4.9e-40 168.3 111 82.0
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.1e-39 167.2 112 84.8
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.4e-39 166.0 112 82.1
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.4e-39 166.0 112 82.1
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.2e-39 165.6 112 80.4
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 3.2e-39 165.6 106 81.1
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 7.1e-39 164.5 111 82.9
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.2e-38 163.7 99 89.9
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.2e-38 163.7 111 82.0
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.6e-38 163.3 111 82.0
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.1e-38 162.9 112 79.5
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.5e-38 162.2 103 82.5
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.6e-38 161.8 115 80.9
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.0e-37 160.6 112 81.2
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 2.3e-37 159.5 111 79.3
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.9e-37 158.7 111 78.4
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 6.6e-37 157.9 100 83.0
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.1e-36 157.1 111 78.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 2.5e-36 156.0 113 78.8
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 9.6e-36 154.1 110 79.1
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.2e-35 153.7 107 80.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.6e-35 153.3 99 84.8
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 1.6e-35 153.3 110 78.2
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 1.6e-35 153.3 107 78.5
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.6e-35 152.1 110 77.3
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 6.2e-35 151.4 107 78.5
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 6.2e-35 151.4 107 78.5
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 6.2e-35 151.4 111 75.7
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.8e-34 149.8 110 76.4
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 2.4e-34 149.4 107 77.6
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 2.4e-34 149.4 107 77.6
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 2.4e-34 149.4 107 77.6
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 2.4e-34 149.4 107 77.6
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 2.4e-34 149.4 103 80.6
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 2.4e-34 149.4 112 73.2
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.1e-34 149.1 110 76.4
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 4.0e-34 148.7 111 77.5
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 5.2e-34 148.3 106 78.3
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 6.9e-34 147.9 111 73.9
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 8.9e-34 147.5 112 75.0
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.5e-33 146.7 112 77.7
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.0e-33 146.4 107 76.6
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 4.4e-33 145.2 107 75.7
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.2e-32 142.9 97 79.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.9e-32 142.5 111 71.2
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 4.2e-31 138.7 105 70.5
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 9.3e-31 137.5 177 53.1
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.5e-30 135.6 97 79.4
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.5e-30 135.6 111 70.3
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.7e-29 133.3 109 69.7
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.7e-29 131.0 112 68.8
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 9.6e-28 127.5 85 80.0
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 4.8e-27 125.2 83 84.3
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 8.1e-27 124.4 96 68.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 9.0e-26 120.9 110 66.4
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.4e-23 111.7 68 91.2
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 6.0e-22 108.2 107 60.7
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.3e-20 102.1 62 83.9
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 3.4e-17 92.4 57 84.2
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 4.5e-17 92.0 92 58.7
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 9.9e-17 90.9 110 50.0
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.4e-15 86.3 50 92.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 7.1e-15 84.7 60 78.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 7.1e-15 84.7 62 75.8
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 7.4e-12 74.7 59 71.2
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 2.1e-11 73.2 57 68.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 6.9e-10 68.2 50 76.0
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 4.6e-06 55.5 102 39.2


User provided reference genes

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