Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 7.5e-155 550.4 270 100.0
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 9.2e-145 516.9 270 93.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.4e-137 493.0 270 88.9
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 3.2e-137 491.9 270 91.1
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.2e-136 490.0 270 87.4
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 4.6e-136 488.0 270 90.7
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 7.8e-136 487.3 270 88.1
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 3.0e-135 485.3 270 87.0
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 5.1e-135 484.6 270 88.1
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 5.1e-135 484.6 269 86.6
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 6.6e-135 484.2 270 88.1
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.1e-134 483.4 270 87.8
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.2e-133 479.9 264 87.5
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 2.8e-133 478.8 271 84.5
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-133 478.8 270 84.8
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 2.8e-133 478.8 270 85.6
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-133 478.8 270 85.2
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.7e-133 478.0 270 85.9
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 6.2e-133 477.6 270 84.8
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.2e-133 477.6 270 84.8
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 6.2e-133 477.6 271 86.0
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.1e-132 476.9 270 85.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-132 475.7 270 85.2
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 2.3e-132 475.7 269 86.2
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 2.3e-132 475.7 270 85.9
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.1e-132 475.3 270 84.8
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 4.0e-132 474.9 267 85.4
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 4.0e-132 474.9 270 85.2
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.2e-132 474.6 270 84.4
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 5.2e-132 474.6 274 83.6
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 5.2e-132 474.6 270 84.8
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 6.8e-132 474.2 270 85.2
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.2e-131 473.4 270 85.6
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-131 473.0 276 83.3
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.5e-131 473.0 270 84.8
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.0e-131 472.6 271 84.1
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-131 472.6 276 83.0
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.0e-131 472.6 268 85.1
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-131 471.9 270 83.3
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 84.4
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.4e-131 471.5 271 83.4
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.8e-131 471.1 276 83.0
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 7.6e-131 470.7 270 83.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 7.6e-131 470.7 270 83.7
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 83.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 83.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 9.9e-131 470.3 270 84.1
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.3e-130 469.9 270 83.7
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.3e-130 469.9 270 84.4
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.3e-130 469.9 270 83.7
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.9e-130 468.8 270 84.1
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 4.9e-130 468.0 270 83.0
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 4.9e-130 468.0 270 82.2
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 8.3e-130 467.2 270 83.3
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 8.3e-130 467.2 270 84.1
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-129 466.5 270 83.3
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.9e-129 466.1 270 83.0
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.9e-129 466.1 270 83.7
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 3.2e-129 465.3 270 83.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 3.2e-129 465.3 270 83.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 83.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 4.1e-129 464.9 270 83.3
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 270 83.7
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 7.1e-129 464.2 270 81.1
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-128 463.4 282 79.4
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.6e-128 463.0 270 83.3
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 1.6e-128 463.0 270 82.6
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.1e-128 462.6 270 83.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 2.7e-128 462.2 270 82.6
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.5e-128 461.8 272 83.5
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 6.0e-128 461.1 270 81.9
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.3e-127 459.9 270 82.2
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.7e-127 459.5 270 83.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-127 459.5 270 82.6
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.3e-127 459.1 270 82.2
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.3e-127 459.1 270 82.2
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.9e-127 458.4 270 81.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.9e-127 458.4 307 76.5
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 5.1e-127 458.0 270 80.4
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 8.6e-127 457.2 268 79.9
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.1e-126 456.8 270 81.5
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.5e-126 455.7 286 78.3
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.5e-126 455.7 268 81.3
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 3.3e-126 455.3 270 81.9
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.6e-126 454.5 270 80.0
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 79.6
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.8e-125 452.2 270 79.6
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 4.7e-125 451.4 270 79.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.1e-124 450.3 269 82.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-124 449.1 270 81.1
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.4e-124 449.1 270 79.3
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 3.1e-124 448.7 270 79.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 6.8e-124 447.6 262 80.9
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 9.9e-123 443.7 268 79.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.8e-122 441.8 270 79.3
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.4e-121 439.9 270 80.7
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 1.4e-121 439.9 270 80.4
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.1e-120 436.0 270 79.6
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 6.0e-120 434.5 269 75.5
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.8e-120 434.1 270 75.9
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.0e-119 433.7 270 81.5
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.1e-118 430.3 268 76.9
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.1e-118 430.3 269 74.3
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 3.3e-118 428.7 270 77.8
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.3e-118 428.7 253 83.4
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.6e-118 427.9 276 79.0
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.6e-117 426.4 270 76.7
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.6e-117 426.4 270 78.5
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 4.8e-117 424.9 270 77.8
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 6.2e-117 424.5 270 74.8
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 8.1e-117 424.1 245 84.5
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.4e-116 423.3 270 78.1
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-116 422.9 270 77.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 3.1e-116 422.2 270 75.6
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 6.9e-116 421.0 270 75.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 9.0e-116 420.6 270 76.7
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.4e-114 414.5 270 76.3
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 4.2e-113 411.8 270 72.6
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 5.4e-113 411.4 267 74.2
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-112 410.2 277 72.6
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.2e-112 410.2 270 77.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 6.0e-112 407.9 270 73.0
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-112 407.5 277 72.6
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-111 406.8 272 72.8
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.0e-111 405.6 270 72.6
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 6.6e-111 404.4 272 72.4
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.7e-111 404.1 271 73.4
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-110 403.3 271 73.4
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.5e-110 403.3 267 70.4
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-110 402.9 277 71.8
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-110 402.5 272 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.1e-108 397.1 270 69.6
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.1e-108 397.1 270 73.3
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 3.1e-108 395.6 237 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.5e-107 393.3 269 68.8
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-107 393.3 271 71.2
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-107 392.1 273 73.6
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 3.8e-106 388.7 272 71.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 6.4e-106 387.9 271 70.5
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.1e-105 387.1 213 87.8
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.2e-104 383.6 270 66.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.6e-104 383.3 236 79.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.0e-103 380.6 271 66.1
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.0e-103 379.0 271 66.4
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 7.4e-102 374.4 272 68.8
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.5e-97 359.4 211 82.0
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.3e-93 347.1 198 86.9
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.1e-92 342.0 250 65.2
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.3e-90 337.0 295 58.3
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 5.0e-90 335.1 218 77.5
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 9.3e-89 330.9 188 84.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-88 329.3 190 82.1
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.3e-79 299.7 269 55.4
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 4.0e-63 245.7 190 66.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.4e-60 237.3 143 80.4
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-59 232.3 134 82.1
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 9.4e-57 224.6 266 45.5
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.1e-56 223.4 182 66.5
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 3.6e-56 222.6 189 65.1
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 4.8e-53 212.2 128 78.1
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.5e-49 200.7 268 41.4
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 4.1e-44 182.6 270 42.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 4.9e-37 159.1 279 35.5
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 7.0e-36 155.2 88 84.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 9.2e-36 154.8 129 62.8
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.9e-34 149.4 82 86.6
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 2.0e-30 137.1 109 65.1
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-30 136.7 77 83.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-26 123.6 69 84.1
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-22 110.2 108 53.7
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 2.9e-21 106.7 68 70.6
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.2e-20 103.2 68 72.1
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.6e-16 89.7 83 55.4
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.6e-14 83.6 50 78.0
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.6e-14 83.6 50 78.0
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 5.8e-14 82.4 66 60.6
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 9.9e-14 81.6 60 61.7
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 4.6e-11 72.8 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 7.8e-11 72.0 57 61.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.6e-08 64.3 50 64.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.0e-07 59.7 41 65.9


User provided reference genes

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