Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 4.1e-127 458.4 287 100.0
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 4.4e-121 438.3 288 86.8
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 7.6e-81 304.7 289 77.5
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 3.1e-58 229.6 291 58.1
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 8.8e-29 131.7 319 43.9
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 7.5e-28 128.6 300 40.0
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 9.8e-28 128.3 321 42.1
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 1.3e-27 127.9 315 42.5
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.7e-27 127.5 311 40.8
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 8.3e-27 125.2 295 40.3
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 4.1e-26 122.9 323 39.9
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.4e-26 122.5 316 42.4
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 5.0e-24 115.9 315 38.1
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 3.3e-23 113.2 319 37.6
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.8e-22 110.2 293 37.2
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 2.3e-21 107.1 307 41.4
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 8.9e-21 105.1 301 42.5
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 2.0e-20 104.0 336 36.9
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.8e-19 100.1 324 37.7
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 2.8e-19 100.1 233 42.1
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 6.3e-19 99.0 313 41.9
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 4.1e-18 96.3 310 39.4
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 1.2e-17 94.7 300 35.7
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 2.0e-17 94.0 308 34.7
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 2.0e-17 94.0 332 40.1
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 1.0e-16 91.7 308 38.6
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 2.3e-16 90.5 309 31.4
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 3.9e-16 89.7 300 36.0
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 8.6e-16 88.6 317 37.2
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.5e-15 87.8 304 34.9
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 3.3e-15 86.7 287 31.0
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.2e-14 84.7 324 32.1
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.1e-14 84.0 316 32.3
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 2.1e-14 84.0 306 35.9
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 1.0e-13 81.6 321 34.3
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-13 81.6 320 29.1
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-13 81.6 312 31.4
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 1.0e-13 81.6 296 36.5
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 1.4e-13 81.3 311 31.5
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.4e-13 81.3 322 43.2
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.8e-13 80.9 342 33.6
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.3e-13 80.5 312 32.4
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 2.3e-13 80.5 316 37.7
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 3.1e-13 80.1 85 57.6
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.0e-13 79.7 318 31.1
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.0e-13 79.7 305 37.4
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.2e-13 79.3 321 29.0
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.8e-13 79.0 309 30.4
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 6.8e-13 79.0 300 38.3
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-12 78.2 318 30.8
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.2e-12 78.2 299 34.1
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.0e-12 77.4 302 32.1
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 7.5e-12 75.5 303 30.0
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 3.7e-11 73.2 297 30.6
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 4.9e-11 72.8 310 36.5
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.9e-11 72.8 324 29.3
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 6.4e-11 72.4 242 32.6
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-10 71.6 319 31.3
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.1e-10 71.6 306 35.0
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.4e-10 71.2 312 30.1
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 1.4e-10 71.2 308 32.5
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 3.2e-10 70.1 319 31.0
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-10 70.1 350 29.4
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 5.4e-10 69.3 341 27.3
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 5.4e-10 69.3 303 34.7
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 5.4e-10 69.3 309 35.0
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 7.0e-10 68.9 312 32.7
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.2e-09 68.2 309 31.1
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 2.7e-09 67.0 335 28.1
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 2.7e-09 67.0 77 50.6
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 3.5e-09 66.6 99 46.5
Gohir.A08G131933 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.6e-09 66.2 102 45.1
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.6e-09 66.2 305 39.7
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 4.6e-09 66.2 310 34.5
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 7.8e-09 65.5 309 32.4
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 7.8e-09 65.5 165 32.7
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.0e-08 65.1 295 29.2
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 1.0e-08 65.1 330 30.6
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.0e-08 65.1 323 27.2
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 3.9e-08 63.2 125 38.4
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 3.9e-08 63.2 307 30.3
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 6.6e-08 62.4 305 37.0
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.5e-07 61.2 345 30.7
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.5e-07 61.2 320 32.2
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 1.9e-07 60.8 337 25.2
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 2.5e-07 60.5 294 30.6
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 2.5e-07 60.5 289 28.4
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 9.5e-07 58.5 325 34.5
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 2.1e-06 57.4 327 31.5
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 2.1e-06 57.4 336 25.9
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.1e-06 57.4 78 47.4
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 3.6e-06 56.6 271 29.9
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 4.7e-06 56.2 339 29.5
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 4.7e-06 56.2 339 29.5
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.2e-06 55.8 76 46.1
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 8.0e-06 55.5 95 41.1
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 8.0e-06 55.5 328 29.9


User provided reference genes

Program Settings