Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 2230.7 1118 100.0
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 2182.1 1118 97.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 2143.6 1184 91.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 2051.2 1114 91.9
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1842.4 1114 80.7
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1839.7 1121 81.0
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1838.9 1129 80.2
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1834.3 1119 80.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1120 80.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1122 80.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1832.8 1123 80.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1831.2 1121 80.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1829.3 1121 80.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1826.6 1121 80.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1826.2 1121 80.6
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1824.3 1120 79.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1823.9 1119 80.3
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1820.1 1121 79.8
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1819.7 1122 79.9
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1818.5 1121 79.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1816.6 1123 79.3
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1813.9 1121 79.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1808.5 1121 79.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1805.4 1093 81.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1805.0 1124 79.4
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1801.2 1123 79.6
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1799.3 1122 79.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1799.3 1121 79.8
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1796.2 1121 79.2
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1124 78.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1120 78.8
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1786.9 1123 79.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1135 77.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1121 79.8
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1783.5 1125 78.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1781.1 1125 78.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1777.7 1115 79.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1776.5 1135 77.6
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1776.5 1121 78.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1774.2 1125 78.0
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1121 78.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1772.7 1122 78.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1123 78.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1765.4 1117 79.0
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1763.4 1122 77.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1758.4 1116 77.8
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1752.3 1122 77.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1749.9 1181 74.4
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1748.8 1139 76.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1743.4 1125 77.6
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1743.4 1075 79.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1743.0 1121 77.7
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1741.1 1122 78.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1736.5 1122 77.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1734.9 1123 76.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1733.8 1125 76.4
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1732.2 1126 76.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1727.2 1160 75.3
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1721.8 1194 73.2
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1721.4 1119 75.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1714.1 1112 77.0
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1115 76.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1706.4 1033 80.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1704.5 1121 74.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1700.3 1077 78.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1689.9 1112 75.3
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1684.8 1120 74.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1122 74.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1674.1 1119 73.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1672.5 1122 73.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1672.1 1118 74.3
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1669.8 1247 69.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1664.8 1120 73.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1652.9 1119 72.9
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1651.7 1119 73.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1650.2 1121 74.4
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1645.2 1121 73.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1637.9 1318 66.2
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1624.0 1115 72.5
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1622.1 1115 72.4
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1618.6 1152 72.1
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1611.7 1116 72.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1610.9 1116 72.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1604.7 1122 71.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1567.0 1142 69.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1566.6 959 80.8
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1561.2 1162 69.9
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1548.5 1150 68.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1530.4 1120 72.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1505.3 1113 68.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1495.3 1125 67.5
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1491.5 1125 66.9
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1489.9 1159 67.3
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1480.3 1103 68.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1479.5 1125 66.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1411.0 867 79.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1397.5 981 73.4
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1394.8 841 81.9
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1389.8 837 81.8
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1354.0 859 76.7
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1220.7 822 71.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1213.7 780 75.5
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1147.1 685 83.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1102.8 1141 50.6
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.2e-309 1065.8 1118 51.0
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.6e-296 1023.1 1525 41.7
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.9e-292 1009.6 1141 48.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.1e-280 969.5 1151 45.4
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.6e-259 900.2 674 65.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.6e-257 892.9 528 85.8
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 3.7e-256 889.0 1372 37.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 4.8e-256 888.6 674 67.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.7e-251 872.8 734 61.2
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.8e-248 862.8 584 76.2
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.2e-206 724.5 617 62.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.4e-199 699.1 434 82.0
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 2.2e-192 677.2 451 71.0
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.7e-181 641.0 436 70.2
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.9e-175 620.9 590 52.0
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.3e-146 523.1 451 59.2
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 7.2e-135 486.1 296 77.7
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.6e-129 468.4 377 69.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 8.8e-117 426.0 325 71.4
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.3e-104 385.6 1092 28.8
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 3.5e-89 334.3 766 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.3e-79 300.8 310 53.9
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.2e-78 297.0 199 72.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 6.4e-75 287.0 1454 21.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.9e-71 275.4 190 67.4
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 7.3e-71 273.5 228 67.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 4.9e-67 260.8 198 73.2
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.3e-63 247.7 176 67.6
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.8e-62 245.0 204 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.3e-61 240.7 313 41.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.9e-61 240.4 292 47.6
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.3e-56 226.1 212 57.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.6e-49 201.1 593 31.4
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 1.1e-45 189.9 212 56.6
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 9.0e-45 186.8 255 41.2
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 4.2e-42 177.9 212 52.4
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 4.2e-42 177.9 329 41.0
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 5.7e-39 167.5 189 47.6
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.4e-37 162.9 726 23.1
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.6e-36 158.7 183 53.6
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.7e-27 129.4 85 77.6
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 8.5e-27 127.1 83 65.1
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-26 126.7 88 77.3
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.5e-26 125.6 164 47.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 7.4e-23 114.0 65 78.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.7e-22 111.7 82 72.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-20 106.7 138 47.8
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.3e-19 103.2 72 68.1
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.7e-19 102.8 161 38.5
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.6e-17 96.3 60 73.3
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.7e-17 94.7 65 64.6
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 2.3e-16 92.4 69 65.2
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-16 91.3 95 52.6
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-15 90.1 64 68.8
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.4e-13 82.4 78 56.4
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.6e-12 79.7 56 69.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-12 79.7 45 80.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.6e-12 79.0 59 69.5
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 2.1e-09 69.3 47 68.1
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 2.7e-09 68.9 54 57.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.6e-09 68.6 43 69.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.8e-08 63.9 71 49.3
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 8.8e-08 63.9 34 73.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.7e-06 59.7 41 61.0
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.8e-06 58.2 49 65.3


User provided reference genes

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