Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 9.6e-214 746.5 363 100.0
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-189 666.0 323 98.5
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 1.5e-182 642.9 322 94.7
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 4.5e-171 604.7 324 87.3
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 2.7e-139 499.2 309 76.4
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 1.7e-138 496.5 322 73.6
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 6.6e-138 494.6 309 74.8
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 2.5e-137 492.7 320 73.1
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 3.6e-136 488.8 323 72.8
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.0e-135 487.3 309 74.1
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 1.0e-135 487.3 309 75.1
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 2.3e-135 486.1 318 71.7
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 4.0e-135 485.3 321 71.3
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 5.2e-135 485.0 327 71.3
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 6.8e-135 484.6 314 73.2
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 1.5e-134 483.4 309 73.5
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 2.6e-134 482.6 305 74.1
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 4.4e-134 481.9 321 69.8
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 5.8e-134 481.5 328 70.1
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 1.3e-133 480.3 333 70.6
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 2.2e-133 479.6 314 73.9
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 2.9e-133 479.2 327 70.3
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 3.7e-133 478.8 308 71.8
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 3.7e-133 478.8 284 77.1
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 6.4e-133 478.0 307 71.7
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 6.4e-133 478.0 319 71.2
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.4e-132 476.9 331 70.7
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.8e-132 476.5 344 67.4
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 2.4e-132 476.1 319 70.2
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 2.4e-132 476.1 300 72.7
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 5.4e-132 474.9 315 72.1
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 5.4e-132 474.9 315 72.1
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 9.2e-132 474.2 305 73.4
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.2e-131 473.8 331 69.8
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 1.6e-131 473.4 331 70.7
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.6e-131 473.4 281 76.2
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 3.5e-131 472.2 319 69.3
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 6.0e-131 471.5 318 68.2
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 6.0e-131 471.5 319 69.9
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 7.8e-131 471.1 305 70.8
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 1.0e-130 470.7 303 71.0
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 1.3e-130 470.3 322 68.3
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.3e-130 469.5 305 72.5
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 2.3e-130 469.5 324 69.4
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.3e-130 469.5 294 73.5
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 3.0e-130 469.2 306 73.2
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 5.0e-130 468.4 309 69.3
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 5.0e-130 468.4 307 70.4
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 5.0e-130 468.4 306 70.3
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 5.0e-130 468.4 324 68.5
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 6.6e-130 468.0 309 70.9
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.5e-129 466.1 319 69.0
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 3.3e-129 465.7 311 69.8
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 3.3e-129 465.7 319 69.0
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 5.6e-129 464.9 316 69.9
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 5.6e-129 464.9 324 68.2
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 7.3e-129 464.5 307 73.3
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.6e-128 463.4 309 70.2
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 2.1e-128 463.0 284 75.0
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 2.1e-128 463.0 331 67.1
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.8e-128 462.6 294 74.1
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 3.6e-128 462.2 305 72.1
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 3.6e-128 462.2 323 69.7
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 8.0e-128 461.1 329 69.0
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 8.0e-128 461.1 310 69.7
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 1.1e-127 460.7 306 70.6
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.1e-127 460.7 309 70.2
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 2.3e-127 459.5 277 73.6
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 3.1e-127 459.1 306 70.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.0e-127 458.8 298 72.1
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 1.5e-126 456.8 279 76.0
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 1.5e-126 456.8 309 68.9
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 2.6e-126 456.1 315 66.7
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 4.4e-126 455.3 304 69.4
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 9.8e-126 454.1 302 68.2
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.7e-125 453.4 279 74.9
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 2.2e-125 453.0 331 65.9
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 2.9e-125 452.6 317 68.5
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 3.7e-125 452.2 278 73.7
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 8.3e-125 451.1 278 73.7
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.6e-123 446.8 279 73.8
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 2.1e-123 446.4 278 75.2
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 6.0e-123 444.9 283 71.4
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.0e-123 444.9 321 66.7
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 7.8e-123 444.5 362 62.7
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 2.3e-122 443.0 330 67.0
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 4.7e-120 435.3 319 65.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.6e-118 429.5 283 71.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 5.8e-118 428.3 273 70.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 5.8e-118 428.3 307 67.8
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 4.9e-117 425.2 312 67.0
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 4.9e-117 425.2 304 66.8
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 1.6e-115 420.2 301 64.1
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 1.0e-114 417.5 339 60.5
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 1.6e-112 410.2 278 66.9
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 6.2e-112 408.3 321 62.6
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 3.8e-109 399.1 299 61.9
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.4e-108 397.1 269 67.7
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 6.0e-107 391.7 321 62.6
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 1.0e-106 391.0 282 63.8
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.3e-106 390.6 235 76.2
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 6.4e-101 371.7 298 61.7
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 3.2e-100 369.4 276 60.9
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 9.6e-97 357.8 325 57.2
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.3e-93 347.4 232 69.4
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.6e-89 331.3 177 89.8
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 2.1e-80 303.5 249 56.6
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.0e-78 297.0 174 76.4
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 4.5e-78 295.8 210 66.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.1e-73 281.2 204 67.2
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.7e-64 250.8 200 59.0
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 4.1e-63 246.1 180 61.1
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-46 191.0 140 68.6
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 2.3e-42 177.2 124 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 4.0e-42 176.4 111 65.8
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.5e-36 157.1 75 94.7
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.2e-36 156.4 74 95.9
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.2e-36 155.6 75 93.3
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 2.3e-34 150.6 96 66.7
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.0e-31 139.0 67 94.0
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 1.0e-29 135.2 306 28.4
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.3e-29 134.8 196 39.8
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 3.7e-24 116.7 69 73.9
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.3e-21 108.2 93 50.5
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.5e-20 104.8 84 59.5
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 1.6e-19 101.3 93 60.2
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.6e-19 101.3 287 26.8
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.7e-19 99.8 49 93.9
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-18 97.8 48 93.8
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-18 97.8 48 93.8
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 2.6e-17 94.0 69 68.1
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 3.6e-11 73.6 56 60.7
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-10 70.9 31 96.8
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 3.1e-10 70.5 314 22.6
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 6.8e-10 69.3 185 31.4
MD02G1103100 Malus domestica HOM05D005821 ORTHO05D006649 1.5e-09 68.2 63 58.7
MD12G1254600 Malus domestica HOM05D005821 ORTHO05D006649 2.0e-09 67.8 63 58.7
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 2.6e-09 67.4 194 26.8
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 3.4e-09 67.0 194 26.3
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 4.4e-09 66.6 51 56.9
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 5.8e-09 66.2 40 70.0
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.3e-08 65.1 323 22.3
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 1.7e-08 64.7 186 25.3
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 1.7e-08 64.7 164 29.9
BcaNung03734 Brassica carinata HOM05D004444 ORTHO05D005246 2.2e-08 64.3 186 25.3
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 2.2e-08 64.3 186 25.3
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 2.9e-08 63.9 186 25.3
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 3.7e-08 63.5 186 25.8
PSO782G3237 Papaver somniferum HOM05D004444 ORTHO05D005246 3.7e-08 63.5 204 26.5
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 3.7e-08 63.5 187 26.2
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.4e-08 62.8 52 53.8
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 6.4e-08 62.8 187 26.2
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 6.4e-08 62.8 191 26.7
Aa31LG11G2870 Aethionema arabicum HOM05D004444 ORTHO05D005246 8.3e-08 62.4 196 24.5
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 8.3e-08 62.4 186 25.8
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 8.3e-08 62.4 187 26.2
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 1.1e-07 62.0 186 25.3
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 1.1e-07 62.0 196 28.6
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 1.1e-07 62.0 196 28.6
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 1.1e-07 62.0 186 25.3
Thhalv10003687m.g Eutrema salsugineum HOM05D004444 ORTHO05D005246 1.1e-07 62.0 212 23.1
Os08g0152700 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 1.4e-07 61.6 204 28.4
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 1.9e-07 61.2 186 24.7
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 1.9e-07 61.2 185 26.5
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 2.4e-07 60.8 52 57.7
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 2.4e-07 60.8 318 21.7
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 3.2e-07 60.5 186 24.7
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 3.2e-07 60.5 186 26.9
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 3.2e-07 60.5 209 26.3
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 3.2e-07 60.5 326 22.1
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 4.1e-07 60.1 198 28.8
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 4.1e-07 60.1 187 25.1
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 4.1e-07 60.1 187 25.7
PRCOL_00005757 Prasinoderma coloniale HOM05D004176 ORTHO05D004845 4.1e-07 60.1 155 27.1
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 9.2e-07 58.9 195 28.7
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.2e-06 58.5 254 26.0
Cre10.g448650 Chlamydomonas reinhardtii HOM05D005821 ORTHO05D006649 2.1e-06 57.8 200 29.0
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 2.7e-06 57.4 194 28.4
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 2.7e-06 57.4 203 27.6


User provided reference genes

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