Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.0e-308 1061.6 549 100.0
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.6e-297 1024.2 550 96.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 4.7e-289 997.3 550 94.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.1e-269 932.9 552 88.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.3e-206 723.4 554 72.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 8.5e-206 720.7 555 70.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 6.1e-204 714.5 556 69.6
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.0e-203 712.2 555 69.9
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 4.4e-202 708.4 555 71.0
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.7e-201 706.4 561 70.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 4.8e-201 704.9 556 69.6
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 4.8e-201 704.9 552 69.9
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.4e-200 703.4 556 70.0
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 9.1e-200 700.7 566 67.3
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 7.7e-199 697.6 557 69.1
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.2e-198 696.0 559 68.7
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.8e-198 695.3 555 69.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 5.0e-198 694.9 556 69.1
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.5e-197 693.3 557 68.8
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.9e-197 693.0 556 68.9
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.5e-197 692.6 555 70.3
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 4.2e-197 691.8 558 70.4
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.2e-196 690.3 558 70.1
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-196 690.3 558 69.7
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.6e-196 689.9 556 68.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 2.7e-196 689.1 554 69.3
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.3e-195 686.0 554 68.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.2e-195 684.9 557 69.3
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.6e-194 682.6 559 68.2
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.6e-194 682.6 559 68.9
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.8e-193 679.1 558 68.3
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.6e-191 673.3 559 66.7
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.5e-189 666.8 560 66.4
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.2e-189 665.2 558 65.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 9.5e-189 664.1 553 66.9
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.7e-188 661.8 560 66.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.5e-186 654.4 560 66.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 5.4e-184 648.3 608 60.9
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.5e-183 645.6 562 64.6
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.0e-182 644.0 518 68.9
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 8.6e-182 641.0 635 59.8
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.3e-181 638.6 561 64.2
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 6.1e-180 634.8 554 64.8
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.0e-179 634.0 555 65.0
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.8e-179 633.3 552 64.9
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.2e-178 630.6 552 64.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 2.0e-178 629.8 557 65.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 2.6e-178 629.4 551 64.4
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 2.9e-177 625.9 553 64.9
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 4.1e-176 622.1 550 65.1
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 6.0e-175 618.2 551 63.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.0e-174 617.5 551 63.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.3e-174 617.1 556 64.2
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 2.3e-174 616.3 566 62.4
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.5e-173 613.6 558 65.2
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.5e-173 612.8 551 63.5
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.5e-173 612.8 555 62.7
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.3e-173 612.5 571 62.0
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.3e-173 612.1 560 63.6
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 7.3e-173 611.3 566 61.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.2e-172 610.5 560 62.3
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.8e-172 609.4 537 65.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.6e-172 609.0 588 60.5
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 8.0e-172 607.8 556 62.2
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.4e-171 607.1 556 61.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.4e-171 607.1 556 62.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 5.2e-171 605.1 549 62.7
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.5e-170 603.6 562 63.7
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.0e-170 603.2 609 58.3
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 9.8e-170 600.9 561 63.5
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.4e-168 595.1 585 60.0
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.6e-167 592.0 585 60.2
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.3e-166 589.7 515 63.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.3e-166 589.7 562 61.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.8e-164 582.8 571 61.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.6e-162 576.2 471 67.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.7e-161 572.4 572 60.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 3.2e-160 569.3 585 58.3
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 6.0e-159 565.1 555 60.9
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.3e-157 558.9 575 59.7
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.7e-156 555.4 564 60.6
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.4e-155 553.9 572 59.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.1e-155 552.7 694 50.7
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 8.9e-155 551.2 573 59.3
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.2e-154 550.8 566 58.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.0e-154 550.1 578 58.8
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 4.4e-154 548.9 573 57.8
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 9.9e-154 547.7 566 58.0
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.7e-153 547.0 568 59.3
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.2e-153 546.6 693 50.2
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.9e-152 543.5 572 57.9
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.2e-152 542.3 471 63.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 7.8e-151 538.1 570 58.4
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.8e-148 529.6 575 57.4
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 2.4e-147 526.6 638 51.6
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.4e-144 516.5 560 56.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.3e-142 510.8 534 57.5
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 8.7e-142 508.1 564 56.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 8.7e-142 508.1 555 53.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 9.6e-141 504.6 453 63.4
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.6e-140 502.7 580 57.1
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 5.3e-139 498.8 580 56.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 5.3e-139 498.8 580 56.9
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 2.9e-137 493.0 578 55.4
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.8e-137 492.7 578 55.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.5e-135 486.1 578 51.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 4.9e-129 465.7 583 50.4
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.6e-124 450.7 430 62.3
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 2.8e-124 449.9 567 51.5
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.6e-122 443.4 412 62.1
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.1e-117 427.9 566 50.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.8e-116 423.3 516 51.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.7e-110 402.1 550 46.5
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 9.7e-109 398.3 386 59.6
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.0e-86 325.1 433 48.7
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 6.3e-84 315.8 566 41.9
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.7e-82 308.9 564 39.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 2.4e-75 287.3 315 57.5
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.2e-69 268.5 496 40.1
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.9e-65 253.8 358 45.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 7.1e-51 206.1 260 45.4
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 3.5e-42 177.2 477 34.0
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.0e-33 149.1 187 54.0
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 5.4e-27 126.7 86 75.6
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 5.1e-25 120.2 87 70.1
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.1e-23 114.8 112 59.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 3.4e-21 107.5 84 67.9
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.5e-19 100.1 233 30.0
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.5e-16 91.3 237 30.4
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 5.6e-16 90.1 205 28.3
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 7.4e-16 89.7 148 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.4e-14 84.7 174 33.9
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.4e-13 80.9 72 59.7
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.3e-09 68.2 60 66.7


User provided reference genes

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