Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 7.9e-112 407.1 207 100.0
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 1.8e-100 369.4 208 92.8
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 1.1e-89 333.6 207 84.5
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 8.5e-82 307.4 207 77.3
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 5.3e-68 261.5 209 67.9
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.6e-67 260.0 193 67.4
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.3e-66 256.9 207 67.6
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 8.5e-66 254.2 208 63.5
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.5e-65 253.4 203 64.0
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.9e-65 253.1 210 63.8
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 5.5e-65 251.5 233 61.8
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 5.5e-65 251.5 210 64.8
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 6.1e-64 248.1 196 63.8
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.4e-63 246.9 204 62.7
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.8e-63 246.5 195 64.6
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 1.8e-63 246.5 204 62.3
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.0e-63 245.7 209 60.8
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 4.0e-63 245.4 204 62.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 8.8e-63 244.2 210 61.0
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 8.8e-63 244.2 204 62.3
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 8.8e-63 244.2 195 62.6
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 4.4e-62 241.9 194 64.9
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.4e-62 241.9 180 65.0
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.7e-62 241.5 196 63.8
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.3e-61 240.4 189 65.1
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.7e-61 240.0 204 62.7
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.2e-61 239.6 188 66.0
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.8e-61 239.2 212 59.4
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.8e-61 239.2 206 62.1
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 3.7e-61 238.8 177 66.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.3e-61 238.0 211 59.2
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 6.3e-61 238.0 212 59.0
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 8.2e-61 237.7 195 61.0
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.4e-60 236.1 202 61.9
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 3.1e-60 235.7 211 58.8
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 3.1e-60 235.7 210 59.5
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 4.1e-60 235.3 205 62.9
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.1e-60 235.3 216 58.8
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.1e-60 234.2 211 58.8
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.2e-59 233.8 197 61.9
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 2.7e-59 232.6 185 63.2
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 4.5e-59 231.9 198 58.6
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 1.0e-58 230.7 180 63.9
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.0e-58 230.7 198 61.1
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.3e-58 230.3 204 61.8
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.7e-58 229.9 204 61.8
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.9e-58 229.2 204 61.3
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 3.8e-58 228.8 207 60.4
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 3.8e-58 228.8 211 55.9
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 5.0e-58 228.4 196 60.7
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 1.1e-57 227.3 200 60.0
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.9e-57 226.5 182 62.6
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 3.2e-57 225.7 204 58.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 5.5e-57 224.9 206 60.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 9.4e-57 224.2 204 57.8
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 1.2e-56 223.8 185 62.7
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.6e-56 223.4 255 51.8
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 2.3e-55 219.5 180 60.6
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 6.8e-55 218.0 192 59.4
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 8.8e-55 217.6 205 58.0
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 2.2e-53 213.0 172 61.6
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 8.3e-53 211.1 206 54.9
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 3.1e-52 209.1 203 52.7
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 5.4e-52 208.4 203 53.7
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.2e-51 207.2 179 59.2
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.2e-51 207.2 200 53.5
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.7e-51 206.1 173 60.1
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 2.7e-51 206.1 202 52.5
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 4.5e-51 205.3 201 54.2
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 7.7e-51 204.5 191 55.5
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 1.0e-50 204.1 202 55.9
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.3e-50 203.8 179 58.1
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.6e-48 196.8 202 53.0
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 2.1e-48 196.4 194 56.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 6.1e-48 194.9 201 54.2
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 5.2e-47 191.8 207 53.1
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 6.8e-47 191.4 203 53.7
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.2e-46 190.7 207 51.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 7.5e-46 188.0 203 50.7
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 7.5e-46 188.0 193 51.8
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.3e-45 187.2 209 49.3
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.2e-45 186.4 207 52.7
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.4e-44 183.7 206 50.0
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 4.1e-44 182.2 203 51.2
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.7e-43 179.5 178 54.5
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 2.3e-42 176.4 201 48.8
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.3e-42 176.4 164 54.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.9e-42 176.0 174 54.6
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 3.3e-41 172.6 178 51.1
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 4.3e-41 172.2 178 51.1
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 5.6e-41 171.8 178 52.2
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 7.3e-41 171.4 178 51.7
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 1.2e-40 170.6 241 43.2
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.1e-40 169.9 205 49.8
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.1e-40 169.9 205 49.8
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.8e-40 169.5 168 55.4
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.6e-40 169.1 178 50.6
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 8.0e-40 167.9 178 50.0
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.8e-39 166.8 205 48.8
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 6.8e-39 164.9 195 47.7
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.5e-38 163.7 178 52.2
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.4e-38 162.5 207 48.3
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 4.4e-38 162.2 173 53.2
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.3e-37 160.6 207 48.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 8.3e-37 157.9 128 63.3
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 3.0e-34 149.4 94 76.6
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 3.9e-34 149.1 135 59.3
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.6e-32 143.7 192 41.7
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 4.9e-29 132.1 199 44.7
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 2.7e-27 126.3 86 68.6
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.2e-19 100.9 107 54.2
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.7e-18 97.1 192 35.9
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 2.4e-15 86.7 198 31.8
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 7.6e-14 81.6 182 31.9
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 9.6e-09 64.7 124 32.3


User provided reference genes

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