Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 0.0e+00 1126.3 594 100.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 0.0e+00 1106.7 594 98.1
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 0.0e+00 1103.6 594 96.8
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.2e-307 1057.4 594 92.3
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.0e-289 998.0 593 86.3
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 8.7e-289 996.5 593 86.3
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.2e-287 990.3 594 86.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.0e-284 983.0 594 84.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 8.4e-284 979.9 586 86.9
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.4e-283 979.2 595 85.7
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.9e-283 978.8 596 85.6
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.6e-282 975.7 594 83.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.6e-282 974.2 596 84.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.3e-281 971.8 598 84.8
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 4.3e-280 967.6 598 85.1
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 9.6e-280 966.5 595 84.5
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.6e-279 965.7 595 81.8
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 4.1e-278 961.1 595 84.0
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.5e-277 959.1 594 84.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.5e-277 959.1 597 82.6
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.8e-273 945.7 594 82.3
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 7.4e-272 940.3 598 81.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.2e-271 938.7 600 82.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.8e-271 937.6 596 82.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 8.2e-271 936.8 596 82.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.2e-269 932.9 595 82.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.2e-269 932.9 598 81.6
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.7e-269 930.2 602 80.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.9e-268 928.3 602 80.4
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.9e-268 928.3 602 80.2
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 6.5e-268 927.2 608 79.3
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.5e-267 925.2 601 79.5
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 7.2e-267 923.7 595 80.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.2e-267 923.7 600 80.2
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.7e-266 921.8 598 80.1
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-265 919.5 606 75.6
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-265 918.3 600 79.0
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.9e-265 917.9 606 75.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 3.9e-265 917.9 601 79.7
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.9e-265 917.9 600 78.8
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.5e-264 915.2 594 79.3
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.5e-264 915.2 606 78.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-263 912.9 602 78.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.7e-263 912.5 600 78.7
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.8e-263 911.0 597 78.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.1e-262 909.8 588 78.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.8e-262 909.1 595 78.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-262 907.9 594 78.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-262 907.9 594 78.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 3.4e-261 904.8 597 78.9
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.9e-260 901.7 594 78.3
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.8e-260 901.4 598 77.4
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 8.5e-260 900.2 594 77.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.5e-259 898.7 594 77.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.2e-259 898.3 611 77.6
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.2e-259 897.1 607 77.8
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-258 896.3 598 76.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.2e-258 896.3 598 76.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.6e-258 896.0 594 77.6
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.6e-258 894.8 594 77.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.7e-258 894.4 596 77.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 7.9e-258 893.6 594 77.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.0e-257 893.3 594 77.8
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.4e-257 892.9 597 75.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.4e-257 892.9 606 75.7
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.0e-257 891.7 595 77.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 9.7e-256 886.7 597 76.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.7e-255 885.9 600 76.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.8e-255 884.4 602 76.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.1e-254 880.2 601 75.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-253 879.4 595 76.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-253 879.4 595 76.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.6e-253 879.4 595 76.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.5e-253 878.2 608 76.2
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 4.5e-253 877.9 598 75.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 5.9e-253 877.5 596 77.2
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 7.7e-253 877.1 594 76.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 5.0e-252 874.4 593 75.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.5e-252 874.0 602 75.2
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-251 873.2 596 74.5
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.5e-251 872.1 597 75.0
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.2e-251 871.7 605 73.9
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 4.2e-251 871.3 596 74.0
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.2e-250 869.8 593 76.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.6e-250 869.4 587 76.5
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 6.1e-250 867.5 604 75.0
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 6.1e-250 867.5 611 75.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.8e-249 865.9 604 75.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 5.2e-249 864.4 596 76.2
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 4.4e-248 861.3 616 74.0
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 5.7e-248 860.9 598 75.4
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 8.2e-247 857.1 594 75.8
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 5.9e-245 850.9 596 74.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.8e-244 848.2 593 74.4
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.0e-244 847.8 594 75.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 8.5e-244 847.0 597 73.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 7.2e-243 844.0 593 75.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.1e-242 842.4 597 72.7
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.4e-241 839.7 605 72.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 6.8e-241 837.4 602 73.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.5e-240 836.3 594 72.1
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.7e-237 825.5 548 75.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.5e-235 819.7 601 72.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.5e-235 818.9 645 69.5
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.2e-235 817.4 594 71.4
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-234 816.2 548 76.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.6e-232 808.9 598 72.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.4e-230 801.2 606 70.8
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-227 793.1 600 71.3
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 5.2e-225 784.6 521 77.9
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.6e-224 782.3 611 68.7
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.7e-223 778.5 611 67.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.9e-221 771.2 602 68.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.0e-220 770.4 595 69.1
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.3e-219 765.0 615 66.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 7.3e-219 764.2 595 69.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 5.6e-211 738.0 597 65.3
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.1e-210 736.1 594 67.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.2e-206 720.7 564 67.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-195 685.6 474 75.5
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.2e-184 650.6 497 71.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.1e-180 635.2 598 60.9
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.5e-168 595.5 517 64.8
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 2.0e-160 570.1 604 52.6
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 6.5e-159 565.1 601 53.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.3e-154 550.8 598 53.3
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 7.4e-139 498.4 600 51.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.2e-132 475.7 614 43.3
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 9.7e-131 471.5 581 47.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 7.5e-91 339.0 209 78.5
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.2e-89 332.0 243 67.1
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.8e-84 317.8 325 52.9
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.1e-77 292.4 626 33.7
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 7.1e-73 279.3 234 67.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.5e-64 250.4 214 63.6
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 4.3e-62 243.4 577 30.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.6e-51 207.6 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.9e-50 203.4 151 70.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 8.5e-34 149.4 98 73.5
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-31 141.7 201 43.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 6.3e-29 133.3 624 23.6
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 3.0e-23 114.4 79 64.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.0e-23 114.4 77 68.8
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 2.6e-22 111.3 79 63.3
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.3e-22 110.9 210 48.6
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 5.5e-17 93.6 114 42.1
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.8e-13 80.5 59 67.8
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.4e-12 79.0 90 45.6
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.8e-12 78.6 94 47.9


User provided reference genes

Program Settings