Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.4e-108 395.6 208 100.0
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.0e-94 349.4 195 95.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.4e-92 342.4 195 93.3
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.1e-86 323.6 195 88.2
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.7e-59 232.6 202 66.8
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 5.0e-58 228.4 198 65.7
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.1e-57 227.3 203 62.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.1e-57 227.3 213 60.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.1e-57 227.3 207 62.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.9e-57 226.5 216 59.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.9e-57 226.5 199 64.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-57 226.1 210 60.0
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 5.6e-57 224.9 198 64.1
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 7.3e-57 224.6 212 59.9
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 9.5e-57 224.2 212 59.0
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.2e-56 223.8 197 62.4
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.6e-56 223.4 205 61.0
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.1e-56 223.0 215 58.1
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.6e-56 222.2 193 65.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 6.1e-56 221.5 215 61.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 6.1e-56 221.5 198 63.1
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 6.1e-56 221.5 210 60.0
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.8e-55 219.9 201 61.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.3e-55 219.5 200 61.0
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.3e-55 219.5 215 59.1
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 6.8e-55 218.0 197 65.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.2e-54 217.2 201 60.2
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.5e-54 216.9 201 59.7
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.5e-54 216.9 201 60.2
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.0e-54 216.5 198 63.6
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.0e-54 216.5 199 61.8
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.6e-54 216.1 198 60.1
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.4e-54 215.7 201 59.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.4e-54 215.7 213 59.6
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 4.4e-54 215.3 197 61.9
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 4.4e-54 215.3 201 59.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.4e-54 215.3 212 57.1
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 9.8e-54 214.2 198 62.1
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 3.7e-53 212.2 212 58.0
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 4.9e-53 211.8 201 59.2
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.9e-53 211.8 199 63.3
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 6.4e-53 211.5 199 60.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.9e-52 209.9 212 55.2
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.2e-52 209.1 201 58.7
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-52 208.4 199 58.3
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 7.0e-52 208.0 198 62.1
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.0e-52 208.0 212 57.1
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.2e-51 207.2 199 57.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-51 207.2 199 57.8
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.2e-51 207.2 199 59.3
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-51 206.8 199 58.3
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-51 206.8 199 58.3
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.6e-51 206.8 199 59.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.5e-51 205.7 202 58.9
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 4.6e-51 205.3 196 57.1
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 6.0e-51 204.9 202 59.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 7.8e-51 204.5 199 58.3
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.3e-50 203.8 199 57.8
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.3e-50 203.0 196 59.7
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.9e-50 202.2 204 55.4
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.0e-50 201.8 198 56.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.6e-50 201.1 199 56.8
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.9e-49 199.9 193 59.1
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-49 199.9 196 55.6
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.5e-49 199.5 188 59.6
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.5e-49 199.5 198 57.1
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 4.3e-49 198.7 196 57.7
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 7.3e-49 198.0 198 58.6
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 9.5e-49 197.6 211 54.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.1e-48 196.4 196 57.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.6e-48 195.7 193 59.6
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 4.7e-48 195.3 212 52.8
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 4.7e-48 195.3 212 52.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 4.7e-48 195.3 198 55.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.8e-47 193.4 197 55.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.2e-47 191.8 266 45.9
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 5.2e-47 191.8 205 53.7
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 8.9e-47 191.0 196 56.6
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.6e-46 189.5 196 54.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.4e-46 189.1 198 55.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 4.4e-46 188.7 196 54.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.8e-46 188.3 207 52.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 7.5e-46 188.0 200 57.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 9.8e-46 187.6 205 52.2
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.7e-45 186.8 205 52.2
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 9.2e-44 181.0 211 51.2
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.5e-41 172.9 195 55.4
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 8.1e-40 167.9 207 48.3
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.3e-39 166.4 147 65.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.0e-38 163.3 195 50.3
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.4e-38 162.2 215 43.7
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.3e-37 160.6 194 49.5
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.1e-36 155.6 217 43.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-34 150.2 196 49.0
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 8.6e-34 147.9 219 40.2
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.1e-32 143.3 195 47.2
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.1e-28 131.0 184 45.1
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-28 129.8 269 37.2
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-28 129.8 114 61.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 6.0e-27 125.2 185 43.2
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.3e-26 123.2 141 47.5
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.1e-25 120.9 113 60.2
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 5.6e-25 118.6 144 51.4
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.6e-24 117.1 133 50.4
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.4e-23 114.0 209 35.9
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.9e-21 106.3 200 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 8.4e-21 104.8 185 34.6
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 9.3e-20 101.3 74 71.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.6e-19 100.5 123 47.2
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.7e-19 99.8 109 52.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 5.1e-18 95.5 74 66.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 8.7e-18 94.7 155 41.9
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.3e-17 92.8 80 58.8
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.1e-16 90.1 156 36.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.2e-14 84.3 62 64.5
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.6e-14 83.2 73 58.9
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 5.8e-14 82.0 200 32.0
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.0e-10 69.7 197 26.9
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 3.0e-10 69.7 70 55.7
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 7.4e-09 65.1 80 48.8
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 8.1e-08 61.6 35 80.0
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.3e-07 58.9 35 77.1
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.3e-07 58.9 35 77.1
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.2e-06 57.8 34 76.5


User provided reference genes

Program Settings