Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 7.3e-312 1073.2 530 100.0
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.4e-298 1028.9 530 93.6
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 7.7e-297 1023.1 532 95.3
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.5e-271 939.1 528 87.1
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.0e-215 752.7 419 85.0
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 6.1e-209 731.1 505 71.7
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 4.1e-205 718.4 464 73.1
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.7e-203 713.0 498 69.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.1e-201 706.1 496 69.4
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 2.3e-200 702.6 462 73.4
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 7.5e-199 697.6 499 67.7
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 7.5e-199 697.6 513 68.0
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 4.8e-198 694.9 511 65.6
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.8e-198 694.9 521 67.6
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.1e-197 693.7 521 67.6
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.1e-197 693.7 496 67.3
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.4e-197 693.3 502 69.1
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 2.4e-197 692.6 532 66.5
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 3.1e-197 692.2 523 66.5
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 3.1e-197 692.2 501 66.9
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 4.1e-197 691.8 507 66.9
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 4.1e-197 691.8 463 71.3
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 7.0e-197 691.0 480 70.0
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 9.1e-197 690.6 521 65.3
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 3.5e-196 688.7 500 68.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 5.9e-196 688.0 502 67.9
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 1.0e-195 687.2 505 66.7
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.9e-195 685.6 521 64.9
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 8.5e-195 684.1 508 65.7
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.9e-194 682.9 502 67.3
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 3.2e-194 682.2 475 69.7
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 9.4e-194 680.6 490 67.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 9.4e-194 680.6 477 67.9
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 6.1e-193 677.9 490 65.1
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.1e-193 677.9 516 66.3
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.0e-192 677.2 529 64.1
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.3e-192 676.0 459 68.6
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 8.8e-192 674.1 490 64.7
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.5e-191 673.3 514 63.4
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 2.0e-191 672.9 516 65.7
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 4.4e-191 671.8 542 63.8
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 1.3e-190 670.2 488 66.4
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 2.2e-190 669.5 467 69.6
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 4.8e-190 668.3 470 68.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.8e-189 666.4 458 69.2
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 2.4e-189 666.0 500 65.0
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.4e-189 666.0 505 64.4
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 4.1e-189 665.2 487 65.9
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 5.4e-189 664.8 478 69.0
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 7.0e-189 664.5 475 66.1
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.2e-188 663.7 501 64.5
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.2e-188 663.7 487 65.9
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 2.7e-188 662.5 457 68.9
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 2.7e-188 662.5 501 64.5
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 4.5e-188 661.8 482 66.2
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 4.5e-188 661.8 482 66.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 5.9e-188 661.4 507 64.1
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 7.7e-188 661.0 514 64.4
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.8e-187 658.7 469 67.2
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 3.8e-187 658.7 490 65.7
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.9e-186 656.4 486 65.8
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 7.2e-186 654.4 468 66.9
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 4.7e-185 651.7 530 62.3
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 6.1e-185 651.4 521 61.6
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 1.0e-184 650.6 466 67.4
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.8e-184 649.8 458 68.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.3e-184 649.4 500 64.6
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 1.5e-183 646.7 504 65.1
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 5.7e-183 644.8 514 63.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 7.5e-183 644.4 448 67.9
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 9.8e-183 644.0 468 65.0
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 8.3e-182 641.0 433 71.1
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.8e-181 639.8 525 61.9
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 7.0e-181 637.9 464 66.2
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.2e-180 637.1 510 62.4
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.6e-180 636.7 528 60.4
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.6e-177 625.5 484 62.6
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.0e-176 622.1 436 67.7
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.0e-175 619.8 427 70.0
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.6e-175 619.4 419 70.9
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 7.5e-175 617.8 458 65.9
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.9e-174 615.9 419 70.9
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 7.8e-172 607.8 419 68.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.9e-170 603.2 480 61.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 9.5e-170 600.9 509 57.0
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.3e-168 596.3 433 66.1
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 5.2e-168 595.1 510 59.0
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 2.4e-165 586.3 456 63.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 7.8e-164 581.3 439 64.5
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.0e-163 579.3 500 57.2
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 2.5e-162 576.2 458 60.7
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 9.8e-159 564.3 419 65.2
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 1.5e-151 540.4 419 62.3
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 5.8e-151 538.5 340 75.6
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 6.0e-148 528.5 391 65.0
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 1.4e-136 490.7 361 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.8e-136 490.3 481 51.8
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 7.6e-135 485.0 464 50.6
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 6.4e-134 481.9 460 50.7
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.4e-125 454.1 531 47.8
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.6e-121 440.7 507 45.2
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.7e-115 418.7 420 53.3
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.2e-93 346.7 320 57.5
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 4.2e-93 346.3 502 44.2
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 4.7e-92 342.8 475 41.7
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.7e-91 339.0 193 78.8
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.0e-90 337.4 342 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.2e-89 332.0 449 39.0
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.0e-86 325.1 477 40.3
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 7.7e-79 298.9 184 72.8
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 9.1e-72 275.4 235 58.7
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 3.3e-69 266.9 453 35.8
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.2e-66 258.5 240 62.5
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 6.3e-65 252.7 153 75.8
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.2e-63 248.4 153 74.5
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.3e-54 217.6 227 52.4
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 6.8e-51 206.1 214 49.5
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 1.2e-31 142.1 172 48.8
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.0e-23 113.2 83 63.9
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 9.0e-19 99.4 94 57.4
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 1.2e-18 99.0 66 66.7
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.8e-17 94.0 92 50.0
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.9e-13 81.6 83 50.6
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 2.1e-12 78.2 53 75.5
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.6e-10 71.2 40 67.5
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 8.7e-06 56.2 93 36.6


User provided reference genes

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