Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020918.2 Cucumis melo HOM05D006676 ORTHO05D008394 2.1e-89 332.4 180 100.0
CsaV3_2G017150 Cucumis sativus L. HOM05D006676 ORTHO05D008394 5.5e-85 317.8 180 96.1
ClCG02G013070 Citrullus lanatus HOM05D006676 ORTHO05D008394 1.9e-77 292.7 180 88.3
Sed0003061 Sechium edule HOM05D006676 ORTHO05D008394 6.9e-72 274.2 180 83.3
Manes.13G131900 Manihot esculenta HOM05D006676 ORTHO05D008394 6.7e-51 204.5 180 63.3
CiPaw.01G028300 Carya illinoinensis HOM05D006676 ORTHO05D008394 2.0e-47 193.0 179 61.5
Dinv26772 Davidia involucrata HOM05D006676 ORTHO05D008394 2.2e-46 189.5 181 60.2
Prupe.7G145000 Prunus persica HOM05D006676 ORTHO05D008394 8.5e-46 187.6 182 60.4
PGR102G2956 Punica granatum HOM05D006676 ORTHO05D008394 1.5e-45 186.8 178 59.6
Glyma.11G060600 Glycine max HOM05D006676 ORTHO05D008394 3.2e-45 185.7 180 58.3
MD02G1159200 Malus domestica HOM05D006676 ORTHO05D008394 4.2e-45 185.3 181 59.7
Ciclev10026596m.g Citrus clementina HOM05D006676 ORTHO05D008394 5.5e-45 184.9 175 59.4
Glyma.01G182300 Glycine max HOM05D006676 ORTHO05D008394 7.2e-45 184.5 180 57.8
TWI09G1529 Tripterygium wilfordii HOM05D006676 ORTHO05D008394 1.6e-44 183.3 183 59.6
QL06p044204 Quercus lobata HOM05D006676 ORTHO05D008394 4.7e-44 181.8 174 58.6
Eucgr.H01944 Eucalyptus grandis HOM05D006676 ORTHO05D008394 1.4e-43 180.3 177 59.3
Hma1.2p1_0261F.1_g105020 Hydrangea macrophylla HOM05D006676 ORTHO05D008394 1.4e-43 180.3 182 59.9
Lj2g0022488 Lotus japonicus HOM05D006676 ORTHO05D008394 1.4e-43 180.3 180 55.6
Thecc.01G046000 Theobroma cacao HOM05D006676 ORTHO05D008394 1.5e-42 176.8 180 61.1
COL.COLO4_22185 Corchorus olitorius HOM05D006676 ORTHO05D008394 2.6e-42 176.0 179 59.8
Nn6g32155 Nelumbo nucifera HOM05D006676 ORTHO05D008394 4.4e-42 175.3 180 57.2
Duzib187G2000 Durio zibethinus HOM05D006676 ORTHO05D008394 5.7e-42 174.9 179 60.3
Potri.007G034600 Populus trichocarpa HOM05D006676 ORTHO05D008394 5.7e-42 174.9 186 55.9
FAN23G1040 Fragaria x ananassa HOM05D006676 ORTHO05D008394 7.5e-42 174.5 181 56.4
Lalb_Chr05g0213091 Lupinus albus HOM05D006676 ORTHO05D008394 7.5e-42 174.5 182 54.9
MD00G1067500 Malus domestica HOM05D006676 ORTHO05D008394 9.7e-42 174.1 180 55.6
arahy.Tifrunner.gnm1.ann1.TQQ6DV Arachis hypogaea HOM05D006676 ORTHO05D008394 2.2e-41 172.9 189 56.1
Gohir.A02G161300 Gossypium hirsutum HOM05D006676 ORTHO05D008394 2.2e-41 172.9 179 58.1
TAR625G0739 Trochodendron aralioides HOM05D006676 ORTHO05D008394 2.2e-41 172.9 180 57.2
Gorai.003G019600 Gossypium raimondii HOM05D006676 ORTHO05D008394 3.7e-41 172.2 179 57.0
CANSAT01G0168 Cannabis sativa HOM05D006676 ORTHO05D008394 6.3e-41 171.4 180 58.9
arahy.Tifrunner.gnm1.ann1.A5DXZZ Arachis hypogaea HOM05D006676 ORTHO05D008394 8.2e-41 171.0 190 56.8
Gohir.D03G019200 Gossypium hirsutum HOM05D006676 ORTHO05D008394 3.1e-40 169.1 179 57.0
Actinidia36526 Actinidia chinensis HOM05D006676 ORTHO05D008394 4.1e-40 168.7 179 57.0
FvH4_1g14550 Fragaria vesca HOM05D006676 ORTHO05D008394 9.1e-40 167.5 181 55.8
FAN19G1679 Fragaria x ananassa HOM05D006676 ORTHO05D008394 9.1e-40 167.5 181 55.8
RcHm_v2.0_Chr2g0103301 Rosa chinensis HOM05D006676 ORTHO05D008394 1.2e-39 167.2 180 56.1
Sabra07G0030200 Salix brachista HOM05D001814 ORTHO05D001845 2.0e-39 166.4 190 54.7
Actinidia12084 Actinidia chinensis HOM05D006676 ORTHO05D008394 3.5e-39 165.6 183 55.7
ECA232G0167 Erigeron canadensis HOM05D006676 ORTHO05D008394 4.5e-39 165.2 181 56.4
Cfa004230 Carpinus fangiana HOM05D006676 ORTHO05D008394 1.3e-38 163.7 248 42.3
Sopen02g015580 Solanum pennellii HOM05D006676 ORTHO05D008394 6.5e-38 161.4 181 54.7
Oeu032926.1 Olea europaea HOM05D006676 ORTHO05D008394 8.5e-38 161.0 185 55.7
Phvul.002G023300 Phaseolus vulgaris HOM05D006676 ORTHO05D008394 1.1e-37 160.6 180 51.1
arahy.Tifrunner.gnm1.ann1.MI0500 Arachis hypogaea HOM05D006676 ORTHO05D008394 1.5e-37 160.2 191 53.9
PSO675G6281 Papaver somniferum HOM05D006676 ORTHO05D008394 1.5e-37 160.2 180 51.1
VMungo1215G3052 Vigna mungo HOM05D006676 ORTHO05D008394 1.9e-37 159.8 180 51.7
MSTRG.15406 Avicennia marina HOM05D006676 ORTHO05D008394 2.5e-37 159.5 177 54.8
FAN26G0249 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.2e-37 159.1 181 52.5
Ca_24806_v3 Cicer arietinum L. HOM05D006676 ORTHO05D008394 9.4e-37 157.5 180 52.2
PSO541G6387 Papaver somniferum HOM05D006676 ORTHO05D008394 9.4e-37 157.5 180 51.1
Cc07_g05420 Coffea canephora HOM05D006676 ORTHO05D008394 1.2e-36 157.1 175 51.4
EL10Ac6g14836 Beta vulgaris HOM05D006676 ORTHO05D008394 3.0e-35 152.5 183 53.6
FAN28G2791 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.0e-35 152.5 181 50.8
Hund14112 Selenicereus undatus HOM05D006676 ORTHO05D008394 5.2e-35 151.8 183 54.1
Lj7A15T51 Lonicera japonica HOM05D006676 ORTHO05D008394 2.6e-34 149.4 186 54.8
Duzib147G0589 Durio zibethinus HOM05D006676 ORTHO05D008394 2.2e-33 146.4 178 50.0
Aqoxy6G00953 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 3.7e-33 145.6 186 49.5
CDE02G4077 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 4.8e-33 145.2 175 50.9
Solyc02g065370.3 Solanum lycopersicum HOM05D006676 ORTHO05D008394 6.3e-33 144.8 181 50.8
Nitab4.5_0002126g0070 Nicotiana tabacum HOM05D006676 ORTHO05D008394 8.3e-33 144.4 181 50.8
AUR62027231 Chenopodium quinoa HOM05D006676 ORTHO05D008394 1.1e-32 144.1 176 54.0
HanXRQChr15g0489591 Helianthus annuus HOM05D006676 ORTHO05D008394 1.8e-32 143.3 176 52.8
Psat2g163920 Pisum sativum HOM05D006676 ORTHO05D008394 2.4e-32 142.9 191 48.7
Nitab4.5_0000090g0080 Nicotiana tabacum HOM05D006676 ORTHO05D008394 1.2e-31 140.6 181 49.2
Rhsim08G0109100 Rhododendron simsii HOM05D006676 ORTHO05D008394 4.5e-31 138.7 276 38.0
CAN.G93.2 Capsicum annuum HOM05D006676 ORTHO05D008394 1.3e-30 137.1 179 48.6
Cpa.g.sc15.74 Carica papaya HOM05D006676 ORTHO05D008394 5.0e-30 135.2 138 55.1
PGSC0003DMG400002746 Solanum tuberosum HOM05D006676 ORTHO05D008394 3.6e-28 129.0 181 47.0
Thhalv10026327m.g Eutrema salsugineum HOM05D006676 ORTHO05D008394 4.7e-28 128.6 180 47.2
Carub.0007s0328 Capsella rubella HOM05D006676 ORTHO05D008394 8.0e-28 127.9 190 44.2
Sp7g34680 Schrenkiella parvula HOM05D006676 ORTHO05D008394 1.0e-27 127.5 173 48.0
TPR.G29856 Trifolium pratense HOM05D006676 ORTHO05D008394 1.8e-27 126.7 200 43.0
AL7G13870 Arabidopsis lyrata HOM05D006676 ORTHO05D008394 4.0e-27 125.6 186 44.6
Sc16g0001500 Simmondsia chinensis HOM05D006676 ORTHO05D008394 4.0e-27 125.6 183 47.0
AT4G37090 Arabidopsis thaliana HOM05D006676 ORTHO05D008394 1.5e-26 123.6 184 44.6
HPP92_004789 Vanilla planifolia HOM05D006676 ORTHO05D008394 2.0e-26 123.2 217 40.1
Medtr5g018550 Medicago truncatula HOM05D006676 ORTHO05D008394 9.8e-26 120.9 183 42.1
Aa31LG6G13890 Aethionema arabicum HOM05D006676 ORTHO05D008394 1.7e-25 120.2 171 42.7
Zm00001eb206480 Zea mays HOM05D006676 ORTHO05D008394 3.7e-25 119.0 174 46.6
vmacro17885 Vaccinium macrocarpon HOM05D006676 ORTHO05D008394 1.8e-24 116.7 232 41.8
CARHR245420 Cardamine hirsuta HOM05D006676 ORTHO05D008394 5.4e-24 115.2 187 40.6
DCAR_025672 Daucus carota HOM05D006676 ORTHO05D008394 5.4e-24 115.2 143 51.0
BolC3t20221H Brassica oleracea HOM05D006676 ORTHO05D008394 9.2e-24 114.4 178 43.3
Os02g0186700 Oryza sativa ssp. japonica HOM05D006676 ORTHO05D008394 1.2e-23 114.0 184 44.6
BcaNung03502 Brassica carinata HOM05D006676 ORTHO05D008394 1.6e-23 113.6 183 42.6
MBI04_g03667_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 2.0e-23 113.2 154 46.8
BraA01t00181Z Brassica rapa HOM05D006676 ORTHO05D008394 4.5e-23 112.1 184 42.9
Ah.02g126080 Amaranthus hybridus HOM05D006676 ORTHO05D008394 5.9e-23 111.7 147 48.3
C01p02080 Brassica napus HOM05D006676 ORTHO05D008394 7.8e-23 111.3 183 42.6
BolC1t00200H Brassica oleracea HOM05D006676 ORTHO05D008394 7.8e-23 111.3 183 42.6
Dinv39914 Davidia involucrata HOM05D006676 ORTHO05D008394 7.8e-23 111.3 98 64.3
AUR62003241 Chenopodium quinoa HOM05D006676 ORTHO05D008394 3.8e-22 109.0 176 44.3
SGA_v2.0_scaffold1G00184 Striga asiatica HOM05D006676 ORTHO05D008394 3.8e-22 109.0 137 52.6
BcaC01g00433 Brassica carinata HOM05D006676 ORTHO05D008394 5.0e-22 108.6 178 42.1
A01p01920 Brassica napus HOM05D006676 ORTHO05D008394 5.0e-22 108.6 185 41.1
C03p79700 Brassica napus HOM05D006676 ORTHO05D008394 5.0e-22 108.6 178 42.1
Migut.K00838 Erythranthe guttata HOM05D006676 ORTHO05D008394 5.6e-21 105.1 182 41.8
SGA_v2.0_scaffold175G39367 Striga asiatica HOM05D006676 ORTHO05D008394 2.1e-20 103.2 142 48.6
Peaxi162Scf00019g02117 Petunia axillaris HOM05D006676 ORTHO05D008394 3.6e-20 102.4 176 41.5
unitig_749.g13556 Utricularia gibba HOM05D006676 ORTHO05D008394 1.4e-19 100.5 162 43.2
BraA08t34206Z Brassica rapa HOM05D006676 ORTHO05D008394 6.8e-19 98.2 181 41.4
GSVIVG01004606001 Vitis vinifera HOM05D006676 ORTHO05D008394 3.7e-17 92.4 98 55.1
GSVIVG01005096001 Vitis vinifera HOM05D006676 ORTHO05D008394 4.9e-17 92.0 98 54.1
Aqoxy2G03321 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 1.4e-16 90.5 143 44.1
Aqoxy6G00951 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 1.4e-16 90.5 143 44.1
A08p22510 Brassica napus HOM05D006676 ORTHO05D008394 1.2e-15 87.4 181 38.7
Haze_15170 Corylus avellana HOM05D006676 ORTHO05D008394 1.1e-13 80.9 184 32.1
THA.LOC104819832 Tarenaya hassleriana HOM05D006676 ORTHO05D008394 1.9e-13 80.1 182 38.5
Sc16g0001490 Simmondsia chinensis HOM05D006676 ORTHO05D008394 2.1e-12 76.6 81 55.6
MBI15_g03557_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 1.2e-10 70.9 81 53.1
arahy.Tifrunner.gnm1.ann1.9JJG5X Arachis hypogaea HOM05D006676 ORTHO05D008394 1.5e-10 70.5 126 42.1
ATR0800G049 Amborella trichopoda HOM05D006676 ORTHO05D008394 2.4e-08 63.2 86 48.8
CDE01G0251 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 3.9e-06 55.8 71 47.9
BcaB03g12365 Brassica carinata HOM05D006676 ORTHO05D008394 8.6e-06 54.7 56 48.2


User provided reference genes

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