Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.0e-242 843.2 482 100.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.4e-228 795.4 483 95.2
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.2e-209 731.9 486 85.8
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.4e-190 668.7 488 78.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 7.3e-153 544.7 490 69.2
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.2e-126 457.6 433 63.7
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.6e-126 456.4 494 62.6
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 5.9e-126 455.3 489 62.8
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.9e-125 453.0 493 61.3
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 5.0e-125 452.2 495 60.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.2e-123 447.6 492 60.6
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.1e-123 446.8 503 58.1
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.7e-123 446.4 488 62.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 6.1e-123 445.3 501 58.3
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-122 444.1 503 57.9
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 3.3e-121 439.5 503 60.8
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.5e-118 430.6 493 57.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.0e-117 427.9 489 56.9
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.7e-117 427.2 470 61.9
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.2e-117 426.8 486 57.0
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.2e-117 426.8 497 61.0
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 5.5e-116 422.2 492 58.5
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.1e-115 420.2 497 60.4
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.0e-114 417.9 493 60.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.4e-114 417.5 497 59.6
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.8e-114 417.2 490 55.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 3.0e-114 416.4 498 56.2
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.8e-114 414.8 499 59.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-113 414.1 499 59.9
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.3e-113 412.9 431 64.5
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.4e-113 412.5 499 59.5
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 4.4e-113 412.5 496 55.6
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.8e-112 409.8 494 56.7
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.1e-111 407.9 494 55.7
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.1e-111 407.9 485 59.2
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 3.1e-111 406.4 499 56.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 5.3e-111 405.6 491 54.2
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.1e-111 404.8 488 59.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.5e-110 404.1 483 57.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.0e-110 403.7 509 53.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.6e-110 403.3 483 56.1
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.9e-110 402.1 487 55.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.9e-110 402.1 488 59.4
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.0e-109 401.4 501 53.1
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.7e-109 400.6 499 57.9
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.7e-109 400.6 497 56.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 6.5e-109 398.7 515 54.2
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.5e-108 397.5 489 54.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 9.4e-108 394.8 485 54.8
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.1e-107 393.7 495 56.2
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.7e-107 393.3 483 55.9
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 8.0e-107 391.7 489 52.4
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.4e-106 391.0 540 52.8
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.3e-106 390.2 504 53.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.3e-106 390.2 496 54.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 5.2e-106 389.0 492 55.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.7e-106 388.7 493 55.4
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 8.8e-106 388.3 486 55.8
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-105 387.9 490 54.3
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.5e-105 387.5 497 57.3
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.0e-105 387.1 468 55.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 3.3e-105 386.3 498 54.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 5.7e-105 385.6 466 60.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 7.4e-105 385.2 466 59.9
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.2e-104 383.6 491 55.2
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 8.2e-104 381.7 502 56.2
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.4e-103 380.9 483 54.9
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 7.0e-103 378.6 507 52.3
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.2e-102 377.9 470 54.3
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.6e-102 377.5 492 55.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.5e-102 376.3 532 53.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.5e-102 376.3 492 52.8
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.7e-102 375.2 490 53.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.7e-101 374.0 488 56.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.8e-101 372.9 490 53.1
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 5.0e-101 372.5 456 56.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 6.5e-101 372.1 453 58.5
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 8.5e-101 371.7 500 55.4
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.5e-100 370.9 445 56.6
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.5e-100 370.2 491 52.5
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 7.2e-100 368.6 498 51.4
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 2.7e-99 366.7 485 54.0
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 3.6e-99 366.3 502 54.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 5.2e-98 362.5 495 52.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.8e-98 362.1 598 47.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.2e-97 361.3 502 53.4
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.5e-97 360.9 487 51.1
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.6e-97 360.1 508 51.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.4e-97 359.4 501 53.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 4.8e-96 355.9 453 57.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 7.7e-94 348.6 435 55.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 4.2e-92 342.8 492 49.0
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.6e-91 340.9 476 54.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 6.1e-91 339.0 489 48.7
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.8e-90 337.4 483 50.9
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.8e-90 337.4 401 54.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.5e-89 334.3 332 68.4
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 2.6e-89 333.6 482 48.5
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.7e-88 330.9 483 51.6
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-87 328.2 482 50.6
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.4e-87 327.8 471 51.8
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.8e-87 327.4 477 51.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.4e-87 327.0 494 51.2
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 9.1e-87 325.1 491 51.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.6e-86 324.3 491 49.3
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.2e-84 315.5 373 58.7
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.8e-82 310.8 446 50.9
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.4e-81 306.2 472 50.6
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.7e-80 304.3 483 46.4
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.1e-79 301.6 482 47.9
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.1e-79 301.6 583 42.2
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.8e-78 295.4 458 49.1
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.3e-77 293.9 398 53.0
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.1e-76 291.6 553 41.2
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-74 283.5 482 49.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.0e-74 283.1 447 46.3
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 5.2e-74 282.7 259 68.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 6.8e-74 282.3 375 53.9
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 3.4e-73 280.0 470 43.4
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.1e-68 265.0 429 47.8
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 6.2e-67 259.2 420 45.7
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.6e-65 253.8 277 57.0
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 6.4e-64 249.2 273 61.2
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.2e-63 246.9 444 43.2
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 4.6e-62 243.0 418 45.7
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 6.4e-56 222.6 290 55.5
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 4.0e-50 203.4 287 53.7
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.1e-47 195.3 443 34.3
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.7e-45 188.0 458 33.6
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.5e-41 174.9 277 43.7
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.6e-35 154.8 431 33.6
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 3.0e-29 134.0 169 53.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.8e-27 127.5 444 31.8
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.2e-24 117.9 312 32.4
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.4e-24 115.9 198 43.9
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.2e-23 114.0 67 79.1
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.2e-22 112.1 92 65.2
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.1e-20 105.5 192 41.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.5e-20 104.4 70 74.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 7.4e-20 102.8 391 30.9
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.1e-19 101.3 185 38.9
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.4e-18 98.6 182 41.2
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 2.0e-17 94.7 176 43.2
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-16 92.4 165 43.6
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 7.2e-15 86.3 200 38.0
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.5e-14 84.0 161 39.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 4.6e-14 83.6 248 35.5
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 6.1e-14 83.2 200 38.0
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-13 82.0 104 49.0
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.3e-13 81.3 114 43.9
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 7.4e-12 76.3 260 28.1
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.8e-10 71.6 145 46.9
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.5e-09 68.6 109 41.3
Cre06.g280800 Chlamydomonas reinhardtii HOM05D004401 ORTHO05D005169 3.4e-09 67.4 288 29.9
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 3.4e-09 67.4 322 28.0
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 3.8e-08 63.9 78 53.8
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.4e-07 62.0 68 47.1
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 2.7e-06 57.8 112 43.8


User provided reference genes

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