Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.1e-173 610.5 315 100.0
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.9e-163 578.2 315 94.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.1e-156 554.3 312 89.4
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.0e-142 510.4 314 84.1
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.6e-98 362.8 306 61.1
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-96 356.3 266 64.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 3.5e-95 352.4 266 63.9
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.7e-94 350.1 269 61.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.9e-94 349.0 314 55.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 3.6e-92 342.4 268 61.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 6.2e-92 341.7 307 56.7
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.8e-91 340.1 266 59.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.0e-91 339.0 266 60.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 5.2e-91 338.6 283 58.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.6e-90 336.3 306 55.2
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.4e-90 335.9 278 57.2
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.2e-89 333.2 305 56.1
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 2.9e-89 332.8 277 58.8
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 6.4e-89 331.6 276 55.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-88 330.9 272 57.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.4e-88 330.5 280 57.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.4e-88 330.5 269 59.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.9e-88 330.1 278 56.1
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-88 330.1 272 57.4
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.9e-88 330.1 300 55.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.1e-88 328.9 266 60.2
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.1e-88 328.2 303 54.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.2e-88 327.8 304 54.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.7e-87 326.2 312 55.1
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.5e-87 325.9 270 57.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.0e-86 324.3 266 57.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.3e-86 323.2 320 50.6
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.0e-86 322.8 269 58.0
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.1e-86 322.0 278 56.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 5.1e-86 322.0 278 56.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 5.1e-86 322.0 324 55.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-85 320.9 303 56.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-85 320.9 303 56.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.9e-85 320.1 268 60.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.9e-85 320.1 299 53.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 2.5e-85 319.7 266 57.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.6e-85 318.5 303 52.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 9.5e-85 317.8 275 56.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.2e-84 317.4 266 56.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.2e-84 317.4 291 52.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.2e-84 317.4 314 53.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.6e-84 317.0 266 55.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-84 317.0 315 52.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.2e-84 315.1 308 51.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 8.1e-84 314.7 278 55.0
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.4e-83 313.9 271 54.6
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.8e-83 313.5 283 53.7
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.4e-83 313.2 308 50.3
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 4.0e-83 312.4 315 51.1
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.2e-83 312.0 300 52.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.8e-83 311.6 300 50.7
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.9e-83 311.2 278 52.9
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.2e-82 310.8 278 52.9
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.0e-82 310.1 274 52.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.6e-82 309.7 265 57.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.6e-82 309.7 274 52.6
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.4e-82 309.3 277 56.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.3e-81 307.4 300 52.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.3e-81 307.4 319 51.7
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.8e-81 305.8 319 50.5
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 8.4e-81 304.7 267 54.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 5.4e-80 302.0 296 49.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 5.4e-80 302.0 290 56.2
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.1e-80 301.6 309 49.2
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.1e-79 300.1 299 49.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.0e-79 298.5 284 49.6
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 7.8e-79 298.1 296 51.0
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.7e-78 297.0 277 50.9
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 5.1e-78 295.4 300 48.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 5.1e-78 295.4 269 53.5
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 6.6e-78 295.0 269 53.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 6.6e-78 295.0 305 48.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-77 294.3 267 53.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.1e-77 294.3 285 52.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.5e-77 293.1 268 53.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.5e-77 293.1 267 52.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 5.6e-77 292.0 291 49.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 7.3e-77 291.6 281 53.0
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 2.1e-76 290.0 308 50.3
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 4.7e-76 288.9 321 47.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.7e-76 288.9 283 51.9
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 6.2e-76 288.5 269 50.9
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.1e-75 287.7 314 46.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-75 287.7 270 51.9
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 270 52.2
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.1e-75 286.2 311 47.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.1e-75 286.2 312 47.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 4.0e-75 285.8 291 50.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 6.9e-75 285.0 308 46.1
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.6e-74 283.1 310 46.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 5.8e-74 282.0 300 46.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 9.9e-74 281.2 267 53.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.3e-73 280.8 291 47.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.7e-73 280.4 268 51.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.4e-72 277.3 299 50.5
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.2e-72 276.2 306 46.7
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.4e-72 275.4 276 50.4
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.0e-71 271.9 316 45.6
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.0e-71 271.9 272 50.7
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.8e-71 271.6 265 49.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.3e-70 270.8 355 42.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 5.1e-70 268.9 287 46.0
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 6.6e-70 268.5 307 45.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.5e-69 267.3 263 50.2
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.3e-69 266.2 294 46.6
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 9.6e-69 264.6 309 43.4
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.1e-67 259.6 306 45.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.2e-66 257.7 199 64.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.5e-66 257.3 294 48.3
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 3.8e-65 252.7 246 53.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.4e-65 251.9 202 62.9
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.4e-65 251.9 202 62.9
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 9.3e-64 248.1 201 56.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.9e-63 245.0 252 48.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.1e-62 242.3 296 43.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-60 236.9 235 49.4
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.6e-58 228.4 260 44.6
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.5e-56 222.2 298 40.9
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.1e-55 220.3 262 42.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.7e-52 209.5 267 41.2
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.8e-51 207.2 264 42.8
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-50 204.1 202 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.2e-49 200.3 294 40.8
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.9e-49 199.9 260 41.2
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.1e-48 198.0 269 37.9
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.5e-48 196.8 264 40.9
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.6e-47 194.1 171 53.8
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.1e-47 193.7 304 37.5
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 6.7e-46 188.7 178 51.1
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.3e-45 186.0 264 37.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 9.7e-45 184.9 270 36.7
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.9e-30 136.3 98 62.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.8e-30 135.2 206 37.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.3e-20 104.8 124 42.7
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.1e-19 99.8 201 31.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 7.7e-18 95.5 98 45.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.0e-17 95.1 132 39.4
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.1e-16 91.7 88 45.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.3e-12 78.2 226 29.2
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.2e-12 77.4 263 24.3
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-11 74.7 102 42.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-11 74.7 102 42.2
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-11 73.2 64 50.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.3e-09 68.2 199 28.1


User provided reference genes

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