Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.9e-60 235.7 191 100.0
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 5.6e-56 221.5 119 96.6
ClCG02G012820 Citrullus lanatus HOM05D000135 ORTHO05D000203 6.7e-41 171.4 115 76.5
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 1.6e-39 166.8 117 75.2
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 9.4e-19 97.8 118 51.7
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 6.7e-17 91.7 87 49.4
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 1.2e-16 90.9 112 46.4
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 2.0e-16 90.1 88 51.1
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 2.0e-16 90.1 100 48.0
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 2.6e-16 89.7 108 47.2
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 2.6e-16 89.7 126 45.2
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 2.6e-16 89.7 87 55.2
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 1.3e-15 87.4 115 43.5
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.7e-15 87.0 87 51.7
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 2.2e-15 86.7 115 43.5
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 2.2e-15 86.7 115 43.5
CANSAT01G1352 Cannabis sativa HOM05D000135 ORTHO05D000203 1.8e-14 83.6 105 44.8
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 3.1e-14 82.8 79 51.9
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 3.1e-14 82.8 105 44.8
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 5.3e-14 82.0 108 44.4
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 5.3e-14 82.0 108 43.5
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 9.1e-14 81.3 83 48.2
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 1.2e-13 80.9 82 51.2
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.2e-13 80.9 113 45.1
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 2.7e-13 79.7 104 48.1
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 5.9e-13 78.6 108 41.7
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 7.7e-13 78.2 88 50.0
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 1.0e-12 77.8 82 46.3
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 2.2e-12 76.6 112 43.8
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 2.2e-12 76.6 79 54.4
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.2e-12 76.6 101 47.5
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 2.2e-12 76.6 88 48.9
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.2e-12 76.6 88 48.9
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 3.8e-12 75.9 88 48.9
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 3.8e-12 75.9 88 48.9
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 3.8e-12 75.9 109 44.0
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 5.0e-12 75.5 75 50.7
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 5.0e-12 75.5 75 50.7
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 5.0e-12 75.5 85 48.2
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 6.5e-12 75.1 100 42.0
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 8.5e-12 74.7 97 43.3
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 1.1e-11 74.3 85 48.2
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 1.1e-11 74.3 89 43.8
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.1e-11 74.3 89 44.9
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.1e-11 74.3 89 44.9
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.5e-11 73.9 75 50.7
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 2.5e-11 73.2 75 52.0
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.5e-11 73.2 103 50.5
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 3.2e-11 72.8 75 52.0
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 3.2e-11 72.8 75 49.3
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.5e-11 72.0 84 50.0
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 104 41.3
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 5.5e-11 72.0 89 42.7
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 7.2e-11 71.6 88 45.5
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 7.2e-11 71.6 109 44.0
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 7.2e-11 71.6 112 42.0
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 9.4e-11 71.2 83 48.2
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 9.4e-11 71.2 113 41.6
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 9.4e-11 71.2 77 45.5
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 9.4e-11 71.2 75 46.7
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 1.2e-10 70.9 75 46.7
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.2e-10 70.9 109 43.1
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 1.6e-10 70.5 104 42.3
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.6e-10 70.5 101 42.6
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 2.1e-10 70.1 88 45.5
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 2.1e-10 70.1 101 42.6
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 2.1e-10 70.1 101 43.6
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 2.1e-10 70.1 88 44.3
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 3.6e-10 69.3 101 42.6
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 3.6e-10 69.3 78 44.9
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 4.7e-10 68.9 110 40.9
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 4.7e-10 68.9 109 41.3
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 4.7e-10 68.9 109 41.3
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 4.7e-10 68.9 80 48.8
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 4.7e-10 68.9 112 39.3
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 4.7e-10 68.9 112 39.3
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 4.7e-10 68.9 88 43.2
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 6.1e-10 68.6 113 39.8
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 6.1e-10 68.6 113 39.8
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 6.1e-10 68.6 88 45.5
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.0e-09 67.8 75 45.3
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.0e-09 67.8 88 45.5
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 1.0e-09 67.8 76 43.4
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 1.0e-09 67.8 90 47.8
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 1.4e-09 67.4 80 48.8
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 103 44.7
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.8e-09 67.0 101 40.6
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.8e-09 67.0 86 45.3
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 88 44.3
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.8e-09 67.0 85 43.5
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 1.8e-09 67.0 95 44.2
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 79 40.5
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 2.3e-09 66.6 74 47.3
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 2.3e-09 66.6 74 47.3
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.3e-09 66.6 88 44.3
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 3.0e-09 66.2 74 45.9
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 3.0e-09 66.2 88 44.3
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 3.0e-09 66.2 109 41.3
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 3.0e-09 66.2 85 42.4
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 3.0e-09 66.2 96 45.8
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 4.0e-09 65.9 88 42.0
AUR62003869 Chenopodium quinoa HOM05D000135 ORTHO05D000203 5.2e-09 65.5 69 50.7
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 5.2e-09 65.5 85 42.4
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 5.2e-09 65.5 85 43.5
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 5.2e-09 65.5 86 41.9
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 5.2e-09 65.5 101 41.6
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 6.8e-09 65.1 101 37.6
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 8.8e-09 64.7 104 41.3
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 1.2e-08 64.3 109 40.4
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 1.2e-08 64.3 109 40.4
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 1.2e-08 64.3 109 38.5
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 2.0e-08 63.5 68 50.0
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 2.0e-08 63.5 88 43.2
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 2.6e-08 63.2 109 39.4
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 2.6e-08 63.2 74 45.9
CSS0044479 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 4.4e-08 62.4 86 40.7
Rhsim05G0109200 Rhododendron simsii HOM05D000135 ORTHO05D000203 5.7e-08 62.0 65 47.7
TAR629G2506 Trochodendron aralioides HOM05D000135 ORTHO05D000203 5.7e-08 62.0 105 39.0
AT5G42380 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 7.5e-08 61.6 113 35.4
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.5e-08 61.6 76 46.1
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 7.5e-08 61.6 92 46.7
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 9.8e-08 61.2 106 38.7
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 1.3e-07 60.8 75 37.3
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 1.7e-07 60.5 117 37.6
Nn4g24354 Nelumbo nucifera HOM05D000227 ORTHO05D003168 1.7e-07 60.5 100 41.0
Nn4g24355 Nelumbo nucifera HOM05D000227 ORTHO05D003168 1.7e-07 60.5 100 41.0
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.2e-07 60.1 75 45.3
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 2.2e-07 60.1 75 45.3
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 2.2e-07 60.1 75 49.3
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 2.8e-07 59.7 57 54.4
FvH4_1g15930 Fragaria vesca HOM05D000135 ORTHO05D000203 2.8e-07 59.7 61 54.1
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 2.8e-07 59.7 76 48.7
Aqoxy3G04020 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 3.7e-07 59.3 80 43.8
AL8G19120 Arabidopsis lyrata HOM05D000135 ORTHO05D000816 4.8e-07 58.9 111 36.0
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 6.3e-07 58.5 83 47.0
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 6.3e-07 58.5 99 39.4
CARHR058370 Cardamine hirsuta HOM05D000135 ORTHO05D000203 8.3e-07 58.2 77 41.6
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 8.3e-07 58.2 105 41.0
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 8.3e-07 58.2 116 37.9
Hma1.2p1_0283F.1_g113440 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 8.3e-07 58.2 66 43.9
Nn3g18356 Nelumbo nucifera HOM05D000135 ORTHO05D000203 1.4e-06 57.4 107 36.4
Carub.0008s0678 Capsella rubella HOM05D000135 ORTHO05D000816 1.8e-06 57.0 111 36.0
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 1.8e-06 57.0 75 45.3
Sp1g33430 Schrenkiella parvula HOM05D000135 ORTHO05D011359 1.8e-06 57.0 58 53.4
Thhalv10019556m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 2.4e-06 56.6 82 36.6
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 2.4e-06 56.6 40 67.5
Nn8g39497 Nelumbo nucifera HOM05D000135 ORTHO05D000203 2.4e-06 56.6 83 41.0
AL7G46640 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 3.1e-06 56.2 72 43.1
AT5G37770 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 3.1e-06 56.2 72 43.1
ECA233G3872 Erigeron canadensis HOM05D000017 ORTHO05D000013 3.1e-06 56.2 106 37.7
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.1e-06 56.2 80 50.0
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 3.1e-06 56.2 80 50.0
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.1e-06 56.2 90 42.2
Solyc01g005370.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 3.1e-06 56.2 66 47.0
Sopen01g001390 Solanum pennellii HOM05D000135 ORTHO05D000203 3.1e-06 56.2 66 47.0
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 4.1e-06 55.8 85 42.4
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 4.1e-06 55.8 66 42.4
Carub.0007s3293 Capsella rubella HOM05D000135 ORTHO05D000203 5.4e-06 55.5 72 41.7
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 5.4e-06 55.5 72 41.7
HanXRQChr15g0476751 Helianthus annuus HOM05D000135 ORTHO05D000203 5.4e-06 55.5 73 49.3
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 7.0e-06 55.1 69 47.8
BcaC08g43136 Brassica carinata HOM05D000135 ORTHO05D011359 7.0e-06 55.1 58 53.4
C06p04130 Brassica napus HOM05D000135 ORTHO05D011359 7.0e-06 55.1 58 53.4
Thhalv10012139m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 7.0e-06 55.1 62 50.0
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 7.0e-06 55.1 86 38.4
Sp7g08140 Schrenkiella parvula HOM05D000135 ORTHO05D000816 7.0e-06 55.1 108 37.0
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 9.1e-06 54.7 87 39.1
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 9.1e-06 54.7 57 54.4
Hma1.2p1_0015F.1_g010650 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 9.1e-06 54.7 74 47.3
Lsat_1_v5_gn_8_25621 Lactuca sativa HOM05D000135 ORTHO05D000816 9.1e-06 54.7 72 44.4
PSO017G3116 Papaver somniferum HOM05D000135 ORTHO05D000203 9.1e-06 54.7 67 41.8
SalBow5G1733 Salvia bowleyana HOM05D000135 ORTHO05D000203 9.1e-06 54.7 107 39.3
SalBow5G5503 Salvia bowleyana HOM05D000135 ORTHO05D000203 9.1e-06 54.7 107 39.3
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 9.1e-06 54.7 75 48.0


User provided reference genes

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