Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 4.9e-310 1067.0 556 100.0
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.3e-153 547.4 330 90.9
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 2.6e-125 453.4 270 90.4
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 1.0e-121 441.4 267 88.4
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 8.3e-92 342.0 276 70.3
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 5.4e-91 339.3 275 70.2
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 9.2e-91 338.6 274 71.5
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 2.1e-90 337.4 284 69.4
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.5e-90 336.7 273 70.3
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.0e-89 335.1 273 70.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.0e-89 335.1 279 68.8
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.3e-89 334.0 275 69.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.9e-89 333.2 273 70.0
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.6e-89 332.4 273 69.6
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.1e-88 331.6 273 69.6
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.8e-87 327.0 280 68.6
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 2.8e-87 327.0 274 68.6
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 2.8e-87 327.0 274 67.5
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 3.6e-87 326.6 288 66.7
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 4.7e-87 326.2 275 66.5
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 1.1e-86 325.1 270 68.5
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.4e-86 323.9 268 67.9
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 2.4e-86 323.9 268 67.9
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 3.1e-86 323.6 278 66.9
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 5.2e-86 322.8 267 68.9
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 5.2e-86 322.8 268 67.9
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.0e-85 320.9 279 67.4
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 4.4e-85 319.7 281 66.2
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 9.9e-85 318.5 276 64.9
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.7e-84 317.8 281 66.5
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 2.2e-84 317.4 278 66.9
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.8e-84 316.6 280 65.7
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 3.8e-84 316.6 277 66.1
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 3.8e-84 316.6 272 64.3
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 4.9e-84 316.2 280 64.3
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 6.4e-84 315.8 280 65.4
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 6.4e-84 315.8 280 65.7
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.1e-83 315.1 277 66.1
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 1.4e-83 314.7 275 64.7
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 4.1e-83 313.2 269 64.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 4.1e-83 313.2 278 65.8
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.2e-82 311.6 280 65.7
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 1.2e-82 311.6 273 66.3
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.2e-82 311.6 274 65.7
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.6e-82 311.2 274 65.3
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.6e-82 311.2 274 65.3
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.6e-82 311.2 274 65.3
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 2.1e-82 310.8 283 64.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 3.5e-82 310.1 276 64.9
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.0e-82 309.3 247 70.4
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 1.0e-81 308.5 281 65.1
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.7e-81 307.8 292 63.0
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.7e-81 307.8 274 64.6
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 3.0e-81 307.0 275 65.5
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.0e-81 307.0 274 64.6
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 5.1e-81 306.2 292 63.0
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 6.6e-81 305.8 272 62.9
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.1e-80 305.1 290 61.4
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.5e-80 304.7 274 64.2
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.9e-80 304.3 293 63.1
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.5e-80 303.9 270 67.0
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 7.3e-80 302.4 272 64.3
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 2.1e-79 300.8 279 63.1
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.8e-79 300.4 272 63.2
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.1e-78 298.5 272 64.0
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.4e-78 298.1 279 63.8
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.8e-78 297.7 277 64.6
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.4e-78 297.4 279 63.8
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.1e-78 297.0 251 68.9
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 4.0e-78 296.6 284 61.6
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 6.9e-78 295.8 278 63.3
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 6.9e-78 295.8 241 68.5
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 9.0e-78 295.4 277 62.1
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 1.2e-77 295.0 283 63.3
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.2e-77 295.0 279 63.8
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.5e-77 294.7 272 64.7
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 2.0e-77 294.3 277 63.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.0e-77 294.3 274 61.7
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 2.6e-77 293.9 272 64.0
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 3.4e-77 293.5 317 57.1
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 3.4e-77 293.5 275 63.6
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 7.6e-77 292.4 272 64.3
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 7.6e-77 292.4 274 64.6
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 7.6e-77 292.4 273 64.5
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 2.2e-76 290.8 278 62.9
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.2e-76 290.8 317 58.7
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 3.8e-76 290.0 280 63.2
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 6.4e-76 289.3 297 61.3
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 8.4e-76 288.9 271 62.7
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.4e-75 287.3 272 61.0
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.4e-75 287.3 275 61.5
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 4.2e-75 286.6 272 62.9
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.2e-74 285.0 279 60.9
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 1.6e-74 284.6 272 61.4
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.1e-74 284.3 202 77.2
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 6.0e-74 282.7 275 61.8
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 1.7e-73 281.2 198 76.8
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 1.5e-72 278.1 228 67.1
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 2.5e-72 277.3 203 75.4
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 9.6e-72 275.4 282 61.7
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.3e-71 275.0 270 60.7
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 2.1e-71 274.2 298 58.1
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 2.1e-71 274.2 228 66.2
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 3.6e-71 273.5 206 75.2
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 8.1e-71 272.3 200 71.5
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 1.4e-70 271.6 274 61.3
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.4e-70 270.8 246 61.0
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.4e-70 270.8 267 62.2
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 3.1e-70 270.4 302 56.6
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 6.9e-70 269.2 208 70.7
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.3e-68 265.0 273 60.4
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.7e-68 264.6 273 60.4
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.7e-68 264.6 273 60.4
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 2.9e-68 263.8 202 72.3
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 6.4e-68 262.7 246 60.2
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 1.4e-67 261.5 208 69.2
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 1.4e-67 261.5 208 69.2
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.9e-67 261.2 266 59.8
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.2e-66 258.5 228 64.0
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 1.2e-66 258.5 219 64.4
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.1e-66 257.7 242 60.7
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 3.5e-66 256.9 278 57.2
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 1.5e-64 251.5 214 62.1
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.3e-63 248.4 256 60.2
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 1.7e-60 238.0 173 72.8
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.9e-59 234.6 237 58.2
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 1.3e-57 228.4 220 58.2
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 8.7e-57 225.7 269 54.6
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 4.3e-56 223.4 190 60.5
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 8.2e-55 219.2 219 56.2
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 5.3e-54 216.5 219 54.3
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-53 214.9 210 56.2
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 2.6e-53 214.2 179 67.6
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.7e-52 211.5 222 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.4e-51 208.4 256 48.4
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.7e-50 204.1 153 71.2
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 6.9e-46 189.5 228 55.7
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 2.0e-45 188.0 222 47.7
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 2.3e-41 174.5 217 47.9
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 3.3e-40 170.6 175 57.1
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.3e-40 170.2 118 75.4
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.3e-39 168.7 112 75.0
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 8.2e-39 166.0 155 61.9
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.7e-31 141.7 110 72.7
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 5.3e-30 136.7 123 63.4
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 6.7e-25 119.8 118 59.3
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 2.8e-23 114.4 218 39.0
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.6e-21 107.8 152 48.7
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 2.7e-18 97.8 243 33.3
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.0e-16 91.7 123 53.7
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 3.8e-12 77.4 49 75.5
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 3.2e-11 74.3 170 35.9
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 6.8e-09 66.6 188 29.8
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 1.2e-08 65.9 176 29.5
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 2.0e-08 65.1 179 30.2
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 2.6e-08 64.7 176 29.0
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 4.4e-08 63.9 179 28.5
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 5.7e-08 63.5 179 27.9
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 7.5e-08 63.2 176 28.4
Lj5A141T90 Lonicera japonica HOM05D000764 ORTHO05D002819 9.8e-08 62.8 193 30.6
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 9.8e-08 62.8 200 27.0
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 9.8e-08 62.8 247 27.1
THA.LOC104800953 Tarenaya hassleriana HOM05D000764 ORTHO05D002819 1.3e-07 62.4 192 28.1
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 2.2e-07 61.6 179 27.9
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 2.2e-07 61.6 169 30.8
Lj9A434G78 Lonicera japonica HOM05D000764 ORTHO05D002819 4.8e-07 60.5 180 27.2
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 6.3e-07 60.1 60 56.7
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 8.3e-07 59.7 266 27.4
ClCG06G015190 Citrullus lanatus HOM05D000764 ORTHO05D002819 1.1e-06 59.3 169 29.6
Nitab4.5_0004342g0070 Nicotiana tabacum HOM05D000764 ORTHO05D002819 1.1e-06 59.3 167 28.7
Nitab4.5_0000646g0170 Nicotiana tabacum HOM05D000764 ORTHO05D002819 1.4e-06 58.9 167 28.7
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.4e-06 58.2 173 31.2
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 3.1e-06 57.8 174 27.0
Rhsim11G0054400 Rhododendron simsii HOM05D000764 ORTHO05D002819 4.1e-06 57.4 211 26.5
MELO3C017270.2 Cucumis melo HOM05D000764 ORTHO05D002819 5.4e-06 57.0 169 29.0
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 5.4e-06 57.0 51 68.6
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 5.4e-06 57.0 175 28.0
Sed0008961 Sechium edule HOM05D000764 ORTHO05D002819 5.4e-06 57.0 169 29.6
FvH4_5g12961 Fragaria vesca HOM05D000764 ORTHO05D002819 7.0e-06 56.6 175 28.0
FAN18G3783 Fragaria x ananassa HOM05D000764 ORTHO05D002006 7.0e-06 56.6 175 28.0
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 7.0e-06 56.6 176 27.8
QL10p022070 Quercus lobata HOM05D000764 ORTHO05D002819 7.0e-06 56.6 190 27.4
Sabra12G0042300 Salix brachista HOM05D000764 ORTHO05D002819 7.0e-06 56.6 186 27.4
Cfa019861 Carpinus fangiana HOM05D000764 ORTHO05D002819 9.1e-06 56.2 192 27.1
SGA_v2.0_scaffold144G35872 Striga asiatica HOM05D000764 ORTHO05D002819 9.1e-06 56.2 172 29.7
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 9.1e-06 56.2 265 26.0


User provided reference genes

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