Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.9e-72 275.8 146 100.0
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 1.4e-70 269.6 146 97.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 3.0e-65 251.9 147 91.8
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 3.0e-57 225.3 150 80.7
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 2.4e-51 205.7 146 76.7
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 1.5e-45 186.4 147 70.1
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 5.8e-45 184.5 147 72.1
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.4e-43 179.9 149 66.4
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 2.5e-43 179.1 153 64.1
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.2e-43 178.3 146 68.5
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 4.2e-43 178.3 141 69.5
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 4.6e-42 174.9 149 65.8
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 1.3e-41 173.3 144 66.7
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.8e-41 172.9 138 70.3
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.3e-41 172.6 142 66.9
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.9e-41 171.8 143 66.4
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 3.9e-41 171.8 143 66.4
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 5.1e-41 171.4 141 68.1
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 8.7e-41 170.6 147 64.6
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 8.7e-41 170.6 144 66.7
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 2.5e-40 169.1 149 63.8
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.2e-39 166.0 158 61.4
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.2e-39 166.0 140 66.4
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.8e-39 165.6 143 64.3
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 3.7e-39 165.2 150 63.3
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.7e-39 165.2 143 65.7
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.7e-39 165.2 139 64.7
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 8.2e-39 164.1 137 65.7
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 1.4e-38 163.3 145 64.1
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 2.4e-38 162.5 147 63.3
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 6.9e-38 161.0 140 64.3
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.5e-37 159.8 140 63.6
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.0e-37 159.5 137 64.2
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 2.0e-37 159.5 147 59.9
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 4.5e-37 158.3 140 65.0
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 4.5e-37 158.3 161 59.0
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 4.5e-37 158.3 139 60.4
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.5e-37 158.3 143 61.5
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.5e-37 158.3 143 61.5
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 7.7e-37 157.5 138 59.4
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.3e-36 156.8 137 63.5
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.3e-36 156.8 139 59.7
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 1.7e-36 156.4 139 60.4
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.7e-36 156.4 137 65.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.2e-36 156.0 144 61.8
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.2e-36 156.0 144 61.8
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 2.9e-36 155.6 138 59.4
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 2.9e-36 155.6 139 60.4
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.8e-36 155.2 140 61.4
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 5.0e-36 154.8 138 65.9
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 8.5e-36 154.1 140 63.6
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 8.5e-36 154.1 139 59.0
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 8.5e-36 154.1 150 61.3
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.1e-35 153.7 144 59.0
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 1.1e-35 153.7 139 59.7
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 1.9e-35 152.9 139 61.9
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 4.2e-35 151.8 146 58.2
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 5.5e-35 151.4 147 59.9
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 5.5e-35 151.4 139 59.7
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 7.2e-35 151.0 143 58.7
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 9.4e-35 150.6 139 57.6
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.2e-34 150.2 128 68.0
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.6e-34 149.8 147 59.2
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-34 149.8 147 59.2
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.6e-34 149.8 140 61.4
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 1.6e-34 149.8 138 58.0
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 2.7e-34 149.1 137 60.6
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 4.6e-34 148.3 137 59.9
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 4.6e-34 148.3 137 62.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 4.6e-34 148.3 140 59.3
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 1.0e-33 147.1 137 59.9
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.0e-33 147.1 141 58.9
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.0e-33 147.1 140 59.3
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.4e-33 146.7 146 55.5
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 1.8e-33 146.4 134 63.4
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.8e-33 146.4 147 56.5
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.3e-33 146.0 131 64.1
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 2.3e-33 146.0 147 55.8
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 3.0e-33 145.6 145 56.6
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.8e-33 144.1 153 57.5
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.1e-32 143.7 150 58.7
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.9e-32 142.9 137 57.7
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.9e-32 142.9 132 59.8
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 3.3e-32 142.1 139 60.4
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 4.3e-32 141.7 140 54.3
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 4.3e-32 141.7 143 57.3
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 5.7e-32 141.4 139 54.0
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 7.4e-32 141.0 127 63.8
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 9.7e-32 140.6 137 59.1
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 9.7e-32 140.6 137 56.2
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.7e-31 139.8 137 56.2
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 2.2e-31 139.4 143 57.3
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 3.7e-31 138.7 137 56.9
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 6.3e-31 137.9 137 55.5
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 8.2e-31 137.5 152 53.3
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.4e-30 136.0 127 61.4
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 2.4e-30 136.0 136 56.6
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 2.4e-30 136.0 142 52.8
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 2.0e-29 132.9 137 51.8
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 3.8e-28 128.6 147 51.0
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.0e-28 128.3 134 56.7
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.0e-28 128.3 134 56.7
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.0e-28 128.3 134 56.7
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.0e-28 128.3 134 56.7
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 6.5e-28 127.9 137 51.8
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 1.4e-27 126.7 134 55.2
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 5.5e-27 124.8 137 54.7
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.6e-26 122.1 133 54.1
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 6.1e-26 121.3 71 83.1
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 7.9e-26 120.9 139 55.4
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.0e-25 120.6 146 51.4
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.9e-25 118.6 145 51.0
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 3.9e-25 118.6 74 79.7
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 6.7e-25 117.9 140 51.4
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 2.2e-23 112.8 136 49.3
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 4.8e-23 111.7 145 46.2
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.1e-22 109.0 114 56.1
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 4.5e-21 105.1 133 48.1
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 5.9e-21 104.8 145 46.2
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.2e-20 102.8 127 51.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.5e-19 99.4 138 42.8
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 4.2e-19 98.6 129 48.1
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 2.3e-17 92.8 112 47.3
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 2.6e-16 89.4 136 42.6
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 1.8e-14 83.2 75 57.3
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.2e-10 70.5 102 46.1
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 6.1e-10 68.2 137 34.3
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.5e-08 63.5 72 43.1
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.7e-07 58.9 58 53.4
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 6.3e-07 58.2 56 57.1
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 9.1e-06 54.3 123 32.5


User provided reference genes

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