Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 7.9e-152 540.4 275 100.0
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.7e-117 425.2 304 75.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.5e-107 392.1 227 89.9
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-104 383.6 227 87.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-104 383.6 227 87.7
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.9e-92 343.2 231 74.5
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.2e-92 342.4 231 73.6
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.0e-91 338.2 227 73.1
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.3e-90 337.0 227 75.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 3.0e-90 335.9 225 75.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 8.6e-90 334.3 227 74.4
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.9e-89 333.2 227 75.3
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.3e-89 332.0 224 73.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 7.3e-89 331.3 227 74.4
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 9.5e-89 330.9 227 73.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.2e-88 330.5 227 74.0
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.1e-88 329.7 227 73.6
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 3.6e-88 328.9 225 73.3
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 4.7e-88 328.6 223 74.9
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 6.2e-88 328.2 229 72.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-87 326.6 223 74.0
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.8e-87 326.6 227 72.7
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 3.1e-87 325.9 223 74.0
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.2e-87 325.1 228 72.8
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.8e-87 324.7 223 73.5
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-86 323.9 227 72.7
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.2e-86 323.9 227 70.5
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.0e-86 323.2 225 71.1
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 3.4e-86 322.4 227 70.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.8e-86 321.6 227 72.2
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.8e-86 321.6 225 71.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 5.8e-86 321.6 231 70.1
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 7.5e-86 321.2 228 70.6
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.3e-85 320.5 227 70.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.2e-85 319.7 225 70.2
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.9e-85 319.3 225 72.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.4e-84 317.0 231 68.0
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.4e-84 317.0 227 69.2
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.9e-84 316.6 231 67.5
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.9e-84 316.6 225 70.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.4e-84 316.2 225 70.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.2e-84 315.8 231 68.0
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.2e-84 315.8 227 68.7
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 4.1e-84 315.5 266 62.8
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 5.4e-84 315.1 227 69.2
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.4e-84 315.1 231 68.4
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 9.2e-84 314.3 225 68.4
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.2e-84 314.3 231 67.5
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 9.2e-84 314.3 225 70.2
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.6e-83 313.5 227 68.7
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.0e-83 311.6 231 66.7
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.0e-83 311.6 225 68.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 6.0e-83 311.6 229 68.1
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 6.0e-83 311.6 229 68.1
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 6.0e-83 311.6 228 68.0
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 7.8e-83 311.2 229 67.2
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.0e-82 310.8 231 67.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-82 310.8 229 67.2
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.0e-82 310.8 231 67.5
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.0e-82 310.8 229 68.1
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-82 310.8 225 68.4
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-82 310.5 229 67.2
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-82 310.5 229 66.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.3e-82 310.5 225 68.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.3e-82 310.5 225 68.4
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.3e-82 309.7 231 67.1
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.3e-82 309.7 225 67.6
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.3e-82 309.7 227 68.7
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.3e-82 309.7 223 68.6
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 2.3e-82 309.7 225 68.4
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 3.0e-82 309.3 229 66.8
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.0e-82 309.3 226 67.3
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.0e-82 309.3 231 66.2
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 5.1e-82 308.5 225 69.8
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.1e-82 308.5 232 68.1
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 6.6e-82 308.1 227 68.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 8.6e-82 307.8 225 68.4
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.1e-81 307.4 225 68.4
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.1e-81 307.4 225 70.2
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.5e-81 307.0 223 70.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-81 306.6 232 65.9
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-81 306.6 225 67.6
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-81 306.2 229 65.5
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.3e-81 305.8 227 68.3
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.3e-81 305.4 225 68.4
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 9.5e-81 304.3 232 65.9
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-80 303.9 232 65.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-80 303.9 232 65.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.2e-80 303.9 232 65.5
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 1.6e-80 303.5 223 67.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.8e-80 302.8 236 64.4
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 2.8e-80 302.8 226 67.3
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.6e-80 302.4 214 72.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.6e-80 302.4 224 67.4
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 4.7e-80 302.0 232 65.5
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 6.2e-80 301.6 224 67.4
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 6.2e-80 301.6 236 65.3
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 8.1e-80 301.2 224 68.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 8.1e-80 301.2 236 65.3
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 8.1e-80 301.2 236 65.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.1e-79 300.8 223 67.7
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.3e-79 299.7 224 67.9
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 5.2e-79 298.5 231 65.4
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 1.2e-78 297.4 227 66.1
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-78 297.0 223 68.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-78 296.6 225 65.8
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.4e-78 295.4 242 66.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.6e-78 294.7 223 67.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.3e-77 293.9 223 65.9
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 3.7e-77 292.4 223 65.9
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 6.4e-77 291.6 224 66.1
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.1e-76 290.8 229 64.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.9e-76 290.0 229 63.8
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 7.1e-76 288.1 224 63.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.7e-75 286.2 249 61.0
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.0e-74 284.3 209 66.0
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.0e-74 284.3 228 62.3
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-74 283.5 228 61.8
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.3e-74 283.1 214 67.3
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 8.6e-74 281.2 207 70.5
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.3e-73 278.1 225 63.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.8e-72 276.2 227 64.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 4.0e-71 272.3 224 61.2
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.8e-71 271.6 208 66.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 6.8e-71 271.6 208 64.4
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.2e-70 270.8 210 64.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.1e-68 261.5 222 63.1
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 7.1e-68 261.5 224 57.6
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.2e-67 260.8 202 63.4
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-67 260.0 196 66.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.6e-67 258.8 222 55.4
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 6.0e-67 258.5 213 59.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 5.1e-66 255.4 228 58.3
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.4e-63 247.3 227 59.9
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.3e-63 245.4 227 59.0
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-61 240.7 202 63.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.2e-61 240.0 181 66.9
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.9e-61 238.8 257 52.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.4e-61 238.0 227 56.4
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 9.3e-60 234.6 223 56.5
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-59 234.2 180 65.6
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.6e-59 233.8 148 79.1
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-59 233.0 180 65.6
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.3e-57 226.1 217 53.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.4e-55 220.7 222 55.9
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.0e-54 216.9 236 53.0
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 8.4e-53 211.5 224 50.0
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.1e-52 211.1 173 64.7
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.1e-52 211.1 226 51.3
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-52 209.5 178 62.9
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.6e-51 207.2 241 50.2
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.8e-50 203.8 226 50.4
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 8.7e-50 201.4 225 48.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.8e-48 196.4 222 50.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.4e-44 184.1 220 46.4
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 7.6e-38 161.8 202 50.5
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.9e-36 157.1 111 67.6
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.5e-36 156.8 104 70.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.0e-34 151.4 249 41.4
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.0e-34 149.8 214 43.0
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-31 138.7 107 66.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 6.9e-31 138.7 247 37.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-30 137.5 126 61.9
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.5e-30 136.0 115 61.7
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.1e-27 125.6 78 76.9
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.4e-26 124.4 171 42.1
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-21 108.2 122 54.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 6.1e-19 99.0 168 35.7
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.6e-17 93.6 73 63.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.4e-15 87.8 55 74.5
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.8e-15 87.4 59 69.5
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 8.0e-11 72.0 106 43.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.0e-10 71.6 223 28.3
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.8e-08 63.5 40 57.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 2.7e-06 57.0 95 42.1


User provided reference genes

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