Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.4e-262 909.1 462 100.0
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.2e-213 746.5 463 84.0
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.3e-202 709.9 470 80.2
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 9.8e-179 630.6 463 71.7
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 2.9e-138 496.1 467 58.9
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.2e-132 475.3 462 58.2
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 5.2e-132 475.3 462 58.0
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 2.1e-125 453.4 462 55.4
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 8.1e-125 451.4 463 54.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.0e-124 449.1 458 55.9
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.4e-123 446.0 462 54.3
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 1.7e-122 443.7 463 55.5
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.9e-122 443.0 462 53.9
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 3.8e-122 442.6 460 55.7
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 3.2e-121 439.5 463 55.3
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 4.6e-120 435.6 458 54.4
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.5e-118 430.6 464 54.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 3.3e-118 429.5 458 52.4
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.6e-117 427.2 462 52.8
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.6e-117 427.2 458 52.6
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 1.4e-116 424.1 458 52.0
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.0e-115 420.2 463 51.8
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.6e-115 419.9 461 53.6
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 3.4e-115 419.5 388 58.0
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 4.5e-115 419.1 455 51.2
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 4.5e-115 419.1 384 59.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 7.6e-115 418.3 461 52.7
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 9.9e-115 417.9 467 52.2
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 8.4e-114 414.8 445 52.8
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.4e-113 414.1 435 53.3
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-113 413.7 454 52.2
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.3e-113 411.4 431 53.6
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 9.3e-113 411.4 412 55.1
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 7.9e-112 408.3 521 48.6
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 7.9e-112 408.3 464 51.1
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.3e-111 406.8 487 49.7
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 3.9e-111 406.0 437 52.2
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 6.7e-111 405.2 469 52.0
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.5e-110 403.3 437 52.2
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 7.4e-110 401.7 463 50.1
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 7.4e-110 401.7 458 50.9
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 7.4e-110 401.7 463 52.5
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.6e-109 400.6 466 50.6
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.6e-109 400.6 462 50.9
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 4.8e-109 399.1 465 51.6
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 4.8e-109 399.1 473 50.1
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.8e-108 397.1 461 52.3
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 9.0e-108 394.8 472 48.9
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.5e-107 394.0 452 50.2
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 3.4e-107 392.9 390 56.2
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.7e-106 390.6 462 48.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.6e-104 382.5 449 50.1
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 4.6e-104 382.5 464 50.4
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.3e-103 380.9 455 48.8
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 3.0e-103 379.8 465 50.8
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 3.9e-103 379.4 417 53.0
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 5.7e-102 375.6 450 48.9
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 7.4e-102 375.2 413 52.1
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 8.2e-101 371.7 455 47.9
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 8.2e-101 371.7 453 48.1
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 9.0e-100 368.2 394 51.0
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 7.6e-99 365.2 365 53.7
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 7.6e-99 365.2 391 52.2
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 2.2e-98 363.6 462 47.2
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 5.0e-98 362.5 455 47.3
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 2.1e-96 357.1 460 47.0
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 7.9e-96 355.1 455 45.9
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.0e-95 354.8 451 46.6
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.3e-95 354.4 453 48.6
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 4.3e-94 349.4 411 50.4
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.2e-93 347.1 454 47.4
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.8e-93 345.9 456 47.6
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 6.3e-93 345.5 475 45.7
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 1.1e-92 344.7 485 44.5
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.1e-92 344.7 457 46.4
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 3.1e-92 343.2 456 46.7
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 9.1e-92 341.7 457 46.8
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.2e-91 341.3 457 46.4
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.2e-91 341.3 386 50.8
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.5e-91 340.9 457 46.2
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.9e-90 336.7 475 45.3
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 1.1e-89 334.7 436 47.7
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 7.2e-89 332.0 461 47.1
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 3.6e-88 329.7 462 43.9
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.4e-87 327.8 464 45.5
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 3.0e-87 326.6 421 45.4
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 6.7e-87 325.5 464 42.0
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 4.8e-85 319.3 460 44.6
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 5.9e-83 312.4 388 48.2
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.1e-81 308.1 296 55.1
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.7e-77 294.3 464 41.6
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 3.5e-75 286.6 464 43.1
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 9.4e-73 278.5 472 40.0
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 4.5e-67 259.6 366 41.5
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.3e-66 258.1 292 47.6
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.5e-66 255.8 226 61.5
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.6e-64 251.1 384 40.6
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.4e-60 237.3 240 52.5
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 7.5e-54 215.7 168 65.5
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 1.0e-47 195.3 358 36.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.8e-47 194.5 445 33.9
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.7e-43 180.6 418 31.8
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.9e-41 174.5 405 30.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 6.2e-40 169.5 112 69.6
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.6e-38 164.1 115 66.1
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-36 157.5 199 43.7
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.3e-34 151.0 133 59.4
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.9e-34 150.2 174 54.0
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-33 147.9 172 45.9
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 5.8e-30 136.3 244 37.7
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-26 125.2 133 54.1
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 8.6e-26 122.5 211 38.9
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-24 118.2 172 40.7
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.4e-22 110.2 67 73.1
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 1.7e-21 108.2 243 31.3
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 2.2e-21 107.8 162 44.4
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 8.4e-21 105.9 77 63.6
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.2e-20 102.4 61 73.8
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 3.3e-17 94.0 171 35.7
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-16 91.7 199 34.7
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 8.1e-16 89.4 70 58.6
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.4e-12 77.8 361 25.8
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.7e-11 74.3 97 44.3
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 9.6e-09 65.9 79 46.8
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-08 65.1 54 51.9


User provided reference genes

Program Settings