Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 0.0e+00 1553.9 1073 100.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 0.0e+00 1464.1 1107 91.8
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 0.0e+00 1344.7 1092 87.2
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1147.9 1104 79.7
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.8e-309 1065.4 1032 75.3
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.5e-193 680.2 1119 57.6
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.1e-184 650.6 1142 53.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 8.9e-183 645.2 1169 57.6
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.3e-181 641.3 1120 59.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 5.4e-180 636.0 1134 54.9
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-174 618.2 1097 55.3
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.4e-164 583.9 1078 57.6
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 5.6e-161 572.8 1124 52.1
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 6.9e-159 565.8 1131 51.8
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 4.4e-158 563.1 1140 47.0
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 8.4e-157 558.9 1124 55.8
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 5.1e-154 549.7 1125 51.4
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.3e-152 545.0 1102 55.2
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 4.0e-151 540.0 1127 55.4
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 5.3e-151 539.7 1079 55.9
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 7.6e-150 535.8 1122 48.9
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 7.1e-148 529.3 1118 55.0
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 3.5e-147 526.9 1195 47.7
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 1.3e-146 525.0 1109 53.6
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.3e-145 520.0 1115 50.3
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 6.2e-144 516.2 1119 53.3
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.8e-143 514.6 1148 53.2
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 4.0e-143 513.5 1117 54.3
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.2e-142 511.9 1112 54.1
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 3.4e-142 510.4 1064 56.9
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.4e-142 510.4 1133 50.9
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 9.9e-142 508.8 1112 51.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 7.1e-140 502.7 1125 49.6
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 5.1e-138 496.5 1199 47.4
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.1e-137 495.4 1169 48.8
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.9e-137 494.6 1170 49.4
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 2.1e-136 491.1 1169 51.6
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 7.4e-129 466.1 1065 53.2
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.8e-127 461.5 1143 53.1
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.2e-126 458.8 1132 52.4
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.5e-126 458.4 1118 51.3
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.2e-124 450.3 1116 50.7
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.1e-123 448.0 1139 50.2
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 2.7e-123 447.6 1121 51.0
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 6.1e-123 446.4 1118 51.6
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.0e-122 444.1 1112 46.9
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.5e-121 441.8 1132 48.7
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 2.5e-121 441.0 1131 48.9
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.5e-121 441.0 1128 48.8
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 9.7e-121 439.1 1138 47.3
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 9.7e-121 439.1 1118 51.2
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.8e-119 434.9 1118 51.1
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.4e-119 434.5 1117 50.5
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 4.1e-119 433.7 1127 50.2
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.5e-118 431.8 1088 50.9
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.6e-118 431.0 1129 50.9
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.6e-118 431.0 1120 51.9
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-117 429.1 1129 50.9
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.5e-116 423.3 1108 50.7
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.8e-114 418.3 1106 50.0
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.8e-114 418.3 1118 50.3
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.5e-113 415.2 1105 50.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.5e-113 415.2 1124 50.5
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.5e-113 415.2 1183 49.5
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.0e-113 414.8 1094 50.4
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 9.7e-113 412.5 1167 49.4
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 3.7e-112 410.6 1099 50.2
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.8e-111 408.3 834 54.9
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 6.9e-111 406.4 712 65.7
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 6.9e-111 406.4 960 54.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.0e-109 402.5 1112 51.0
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 3.8e-109 400.6 1111 49.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 8.5e-109 399.4 1000 50.3
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 5.5e-108 396.7 498 71.3
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 2.1e-107 394.8 926 45.2
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.8e-106 391.7 1131 46.4
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.0e-105 388.3 1142 45.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 1.6e-102 378.6 1120 49.4
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 3.8e-101 374.0 1169 44.6
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.4e-98 365.5 1217 46.8
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 7.5e-97 359.8 1115 48.6
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.1e-95 355.9 1122 49.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 5.3e-95 353.6 697 60.0
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.6e-94 352.1 1126 47.5
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.5e-94 350.9 740 50.9
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 1.3e-93 349.0 1136 47.6
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.8e-93 347.4 894 53.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 2.6e-89 334.7 1149 46.8
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.2e-88 331.6 1108 45.5
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 4.1e-87 327.4 1164 46.2
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.9e-85 321.2 1181 44.7
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 3.8e-85 320.9 1161 45.5
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 7.2e-84 316.6 1157 45.7
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.0e-77 296.2 761 46.4
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.8e-77 294.3 833 55.1
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 8.6e-69 266.5 1027 45.5
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.6e-62 245.7 234 53.0
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.8e-42 179.1 279 77.4
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.8e-42 179.1 124 70.2
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 6.9e-42 177.2 123 72.4
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.3e-40 172.9 660 44.1
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.1e-39 169.9 742 41.9
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.4e-39 169.5 256 40.2
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.3e-39 166.8 232 42.7
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.3e-37 162.2 320 65.3
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 5.6e-36 157.5 304 60.9
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.6e-36 156.8 237 41.8
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.4e-34 152.1 128 64.8
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 7.6e-33 147.1 235 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 9.9e-33 146.7 230 41.3
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.4e-31 142.9 119 61.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 4.6e-30 137.9 106 62.3
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.1e-28 133.3 235 35.7
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 7.4e-28 130.6 236 38.6
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.6e-28 130.2 107 60.7
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.9e-26 124.0 742 38.4
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.6e-22 112.8 109 54.1
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 2.1e-22 112.5 274 31.8
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.7e-21 107.1 202 34.2
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 2.8e-19 102.1 143 48.3
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.2e-19 100.5 157 36.3
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.4e-17 95.1 99 73.7
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 3.8e-16 91.7 94 44.7
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 9.7e-12 77.0 235 30.2
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.2e-11 75.9 78 48.7
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.5e-07 61.2 364 26.9
SEGI_00210 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 6.1e-06 57.8 48 58.3


User provided reference genes

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