Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 1.5e-170 602.8 315 100.0
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 4.0e-107 392.1 250 85.6
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 3.4e-98 362.5 250 81.6
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 2.3e-86 323.2 250 75.2
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 7.1e-64 248.4 216 67.1
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 9.3e-64 248.1 250 60.8
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 9.3e-64 248.1 252 59.5
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 7.9e-63 245.0 251 61.0
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 2.3e-62 243.4 251 61.0
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 3.0e-62 243.0 195 70.8
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 1.5e-61 240.7 215 65.1
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 1.5e-61 240.7 224 63.4
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 2.5e-61 240.0 251 59.8
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 3.3e-61 239.6 195 70.3
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 3.3e-61 239.6 224 63.4
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 5.6e-61 238.8 251 58.2
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 7.4e-61 238.4 250 59.2
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 9.6e-61 238.0 257 58.8
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 9.6e-61 238.0 257 56.8
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 2.1e-60 236.9 250 59.2
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 2.8e-60 236.5 258 57.8
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 8.1e-60 235.0 268 57.1
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 5.3e-59 232.3 254 58.7
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 1.2e-58 231.1 196 67.9
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 2.0e-58 230.3 251 59.8
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 2.6e-58 229.9 251 59.4
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 3.4e-58 229.6 251 59.4
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 9.9e-58 228.0 188 68.6
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 2.2e-57 226.9 195 69.2
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 2.2e-57 226.9 251 59.4
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 4.9e-57 225.7 257 58.4
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 8.4e-57 224.9 194 67.5
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 1.4e-56 224.2 214 63.6
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 1.4e-56 224.2 241 59.3
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 1.9e-56 223.8 246 55.7
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 2.4e-56 223.4 192 68.8
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 2.4e-56 223.4 246 57.7
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 3.2e-56 223.0 244 58.2
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 3.2e-56 223.0 188 68.6
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 4.2e-56 222.6 244 57.8
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 4.2e-56 222.6 223 60.1
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 9.3e-56 221.5 254 57.5
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 9.3e-56 221.5 223 61.0
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 1.2e-55 221.1 253 59.3
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 1.2e-55 221.1 195 65.6
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 1.6e-55 220.7 196 65.3
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 1.6e-55 220.7 256 56.6
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 4.6e-55 219.2 195 65.1
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 6.0e-55 218.8 197 66.5
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 7.9e-55 218.4 250 55.2
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 7.9e-55 218.4 223 60.5
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 1.0e-54 218.0 223 60.1
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 1.8e-54 217.2 194 64.4
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 2.3e-54 216.9 244 56.6
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 2.3e-54 216.9 244 57.0
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 3.0e-54 216.5 192 67.2
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 3.0e-54 216.5 195 64.1
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 5.1e-54 215.7 208 63.0
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 5.1e-54 215.7 253 55.7
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 8.7e-54 214.9 250 58.4
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 1.1e-53 214.5 253 55.7
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 1.1e-53 214.5 194 63.9
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 5.6e-53 212.2 195 63.6
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 7.4e-53 211.8 193 62.7
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 9.6e-53 211.5 202 60.9
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 9.6e-53 211.5 197 65.0
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 2.1e-52 210.3 253 55.3
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 2.8e-52 209.9 250 56.0
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 2.8e-52 209.9 192 64.6
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 3.7e-52 209.5 205 58.0
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 3.7e-52 209.5 196 64.8
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 8.2e-52 208.4 201 61.7
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 1.8e-51 207.2 180 66.7
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 3.1e-51 206.5 158 72.2
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 4.0e-51 206.1 198 60.6
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 9.0e-51 204.9 254 55.1
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 9.0e-51 204.9 254 55.1
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 9.0e-51 204.9 198 60.6
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 2.0e-50 203.8 191 63.9
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 2.6e-50 203.4 157 71.3
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 5.8e-50 202.2 203 61.1
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 7.6e-50 201.8 149 74.5
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 1.0e-49 201.4 200 60.0
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 3.8e-49 199.5 225 56.0
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 4.9e-49 199.1 202 57.9
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 6.5e-49 198.7 231 55.0
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 6.5e-49 198.7 252 53.6
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 6.5e-49 198.7 189 64.0
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 6.5e-49 198.7 195 60.5
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 3.2e-48 196.4 206 57.3
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 7.1e-48 195.3 250 52.4
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 3.5e-47 193.0 260 50.0
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 2.3e-46 190.3 170 66.5
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 8.7e-46 188.3 186 61.3
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 1.9e-45 187.2 147 70.1
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 3.3e-45 186.4 230 52.2
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 5.7e-45 185.7 213 55.9
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 7.4e-45 185.3 146 71.2
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 1.8e-43 180.6 145 69.0
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 1.8e-43 180.6 145 69.0
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 4.1e-43 179.5 170 62.4
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 4.5e-42 176.0 189 54.0
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 1.9e-40 170.6 179 60.9
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 5.5e-40 169.1 215 51.2
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 1.4e-38 164.5 188 58.0
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 2.5e-37 160.2 163 52.8
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 3.3e-37 159.8 176 50.0
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 2.8e-36 156.8 170 53.5
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 1.1e-35 154.8 174 51.1
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 1.0e-33 148.3 154 50.6
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 5.7e-29 132.5 106 69.8
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 1.5e-26 124.4 191 40.8
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 2.2e-25 120.6 117 58.1
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 3.6e-23 113.2 96 63.5
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 1.4e-22 111.3 83 72.3
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 8.8e-22 108.6 121 48.8
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 4.8e-20 102.8 162 40.7
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 1.4e-19 101.3 90 64.4
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 7.0e-19 99.0 166 38.6
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 2.6e-13 80.5 94 55.3
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 4.4e-13 79.7 168 35.7


User provided reference genes

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