Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 8.5e-179 630.2 307 100.0
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 3.2e-133 478.8 327 77.7
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.6e-121 439.9 363 66.1
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 9.9e-111 404.1 312 70.2
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.1e-90 337.4 314 58.9
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.4e-88 329.7 306 59.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.5e-87 327.0 316 56.6
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.5e-87 327.0 306 58.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.5e-87 327.0 308 57.5
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.4e-87 325.9 307 59.0
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 4.5e-87 325.5 303 59.4
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.9e-86 322.8 314 57.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.1e-85 320.9 313 57.2
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.1e-84 316.6 339 53.4
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.5e-84 315.8 307 55.4
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 6.0e-84 315.1 307 55.4
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.0e-84 315.1 302 58.3
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 7.9e-84 314.7 305 55.7
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 3.0e-83 312.8 305 54.8
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 5.1e-83 312.0 317 54.9
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 6.7e-83 311.6 307 57.0
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.9e-82 310.1 317 54.6
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.9e-82 310.1 307 55.0
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 2.5e-82 309.7 305 57.7
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.8e-81 306.2 349 52.1
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 3.7e-81 305.8 321 52.3
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 4.8e-81 305.4 310 54.2
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 6.2e-81 305.1 322 53.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.4e-80 303.9 306 54.2
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.1e-80 302.8 269 59.1
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 3.1e-80 302.8 308 54.2
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 4.0e-80 302.4 317 54.6
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 5.3e-80 302.0 317 54.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 6.9e-80 301.6 318 55.0
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 6.9e-80 301.6 306 54.9
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 3.4e-79 299.3 253 60.5
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 3.4e-79 299.3 317 53.3
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.4e-79 299.3 307 56.4
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 4.5e-79 298.9 259 60.6
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 5.8e-79 298.5 306 52.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.8e-79 298.5 310 54.8
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 5.8e-79 298.5 344 50.6
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.0e-78 297.7 309 55.0
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.0e-78 297.7 268 57.1
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.0e-78 297.7 319 52.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.0e-78 297.7 303 53.1
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 4.9e-78 295.4 256 60.5
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 4.9e-78 295.4 305 56.1
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.4e-77 293.9 311 55.0
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.4e-77 293.9 310 54.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.5e-77 293.1 317 54.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.5e-77 293.1 307 53.4
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.2e-77 292.4 302 53.3
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.5e-77 292.0 321 50.8
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.2e-76 290.8 303 51.5
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.1e-76 290.0 319 54.2
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 3.5e-76 289.3 287 56.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 3.5e-76 289.3 287 56.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 3.5e-76 289.3 287 56.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 3.5e-76 289.3 319 53.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.0e-76 288.5 261 57.9
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 7.9e-76 288.1 309 54.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.0e-75 287.7 303 50.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 1.0e-75 287.7 308 51.0
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.8e-75 287.0 327 49.8
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.0e-75 286.2 305 53.4
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.1e-75 285.4 323 53.3
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 5.1e-75 285.4 303 50.5
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.7e-75 285.0 306 52.3
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 8.7e-75 284.6 324 53.1
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.5e-74 283.9 323 51.1
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.5e-74 283.9 323 51.1
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.5e-74 283.9 323 51.1
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.9e-74 283.5 328 53.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.5e-74 283.1 324 53.4
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.5e-74 283.1 343 48.7
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.3e-74 282.7 306 52.3
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.6e-73 280.4 232 62.9
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.1e-73 280.0 303 49.8
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 4.8e-73 278.9 257 58.4
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 3.1e-72 276.2 304 49.7
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 3.1e-72 276.2 305 52.5
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 4.1e-72 275.8 304 53.0
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 5.3e-72 275.4 263 55.9
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 6.9e-72 275.0 277 54.9
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 3.4e-71 272.7 277 54.5
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.4e-71 272.7 300 54.3
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.0e-70 271.2 264 57.6
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.8e-70 269.2 265 57.7
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 6.1e-68 261.9 239 61.9
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.0e-67 261.2 293 52.6
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 3.0e-67 259.6 258 52.3
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 1.5e-66 257.3 305 50.8
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 7.4e-66 255.0 231 58.4
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.7e-65 252.7 311 48.6
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.4e-64 250.8 299 49.8
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 5.3e-64 248.8 314 47.8
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.9e-64 248.4 260 51.9
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 9.1e-64 248.1 257 52.5
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.8e-62 242.7 270 48.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.1e-61 241.1 236 58.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.1e-60 235.3 280 48.2
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.7e-57 227.3 194 60.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 7.7e-55 218.4 267 49.4
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.3e-54 217.6 253 46.2
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 7.9e-52 208.4 469 34.3
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 5.2e-51 205.7 259 45.2
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 6.7e-51 205.3 254 45.7
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-49 200.7 213 53.5
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.4e-48 197.6 237 48.5
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.6e-47 194.1 250 50.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 8.0e-44 181.8 243 41.6
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 7.0e-40 168.7 141 61.0
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.7e-38 164.1 151 55.0
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.7e-36 156.8 127 57.5
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 3.6e-36 156.4 136 61.0
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.4e-35 154.5 149 50.3
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.3e-33 147.9 125 61.6
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.2e-33 147.1 81 82.7
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.3e-33 145.6 133 57.1
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 5.9e-31 139.0 247 37.7
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.0e-30 138.3 76 81.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.0e-30 136.0 129 58.1
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 6.1e-28 129.0 114 51.8
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 8.0e-28 128.6 100 61.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.8e-27 127.5 217 40.6
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.8e-25 120.2 67 85.1
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 4.9e-25 119.4 91 67.0
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 6.3e-25 119.0 86 68.6
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 6.3e-25 119.0 86 68.6
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.5e-21 107.8 97 55.7
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 7.5e-18 95.5 62 67.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.1e-16 91.7 99 53.5
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.4e-16 90.5 64 70.3
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 7.8e-15 85.5 41 90.2
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.0e-14 85.1 73 57.5
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 5.0e-14 82.8 48 75.0
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.3e-13 79.0 93 47.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.8e-12 77.0 42 81.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.3e-11 73.9 197 29.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.7e-09 67.8 53 62.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.2e-08 63.5 209 26.3
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.6e-07 61.2 47 57.4


User provided reference genes

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