Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.9e-46 188.7 89 100.0
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.2e-29 132.9 62 98.4
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 2.1e-29 132.1 62 98.4
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 1.2e-27 126.3 62 93.5
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 2.0e-27 125.6 62 93.5
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 7.5e-27 123.6 62 91.9
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 7.5e-27 123.6 62 91.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 7.5e-27 123.6 62 91.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 1.3e-26 122.9 62 90.3
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 1.7e-26 122.5 61 90.2
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 2.2e-26 122.1 62 88.7
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 3.7e-26 121.3 62 90.3
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 3.7e-26 121.3 62 88.7
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 4.8e-26 120.9 62 88.7
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 4.8e-26 120.9 62 88.7
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 4.8e-26 120.9 62 87.1
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 6.3e-26 120.6 62 90.3
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.8e-25 119.0 62 87.1
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 1.8e-25 119.0 62 87.1
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 2.4e-25 118.6 62 87.1
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 2.4e-25 118.6 62 87.1
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 2.4e-25 118.6 62 87.1
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 2.4e-25 118.6 62 87.1
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 2.4e-25 118.6 62 87.1
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 3.1e-25 118.2 62 87.1
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 3.1e-25 118.2 62 88.7
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 3.1e-25 118.2 62 83.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 3.1e-25 118.2 62 85.5
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 3.1e-25 118.2 62 87.1
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 87.1
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 85.5
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 85.5
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 85.5
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 85.5
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 85.5
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 4.1e-25 117.9 62 87.1
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 7.0e-25 117.1 62 87.1
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 9.1e-25 116.7 62 87.1
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 9.1e-25 116.7 62 85.5
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 9.1e-25 116.7 62 85.5
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.2e-24 116.3 62 85.5
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.2e-24 116.3 62 87.1
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 1.2e-24 116.3 71 74.6
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 1.6e-24 115.9 62 83.9
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 2.0e-24 115.5 62 83.9
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 2.0e-24 115.5 62 83.9
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 2.0e-24 115.5 62 82.3
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 2.0e-24 115.5 62 82.3
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 2.0e-24 115.5 62 83.9
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 2.7e-24 115.2 62 82.3
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 82.3
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 4.5e-24 114.4 75 76.0
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 85.5
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 85.5
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 85.5
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 85.5
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 4.5e-24 114.4 62 85.5
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 5.9e-24 114.0 62 82.3
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 5.9e-24 114.0 62 82.3
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 7.7e-24 113.6 62 83.9
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 1.3e-23 112.8 62 83.9
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 1.7e-23 112.5 62 80.6
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 2.2e-23 112.1 62 83.9
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 3.8e-23 111.3 62 80.6
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 6.5e-23 110.5 62 82.3
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 6.5e-23 110.5 62 82.3
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 8.5e-23 110.2 62 79.0
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 8.5e-23 110.2 62 79.0
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.5e-22 109.4 62 82.3
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 1.9e-22 109.0 65 76.9
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 3.2e-22 108.2 62 79.0
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.2e-22 108.2 65 75.4
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 4.2e-22 107.8 62 79.0
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 4.2e-22 107.8 62 79.0
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 4.2e-22 107.8 69 75.4
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 80.6
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 79.0
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 5.5e-22 107.5 62 77.4
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 7.2e-22 107.1 62 77.4
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 1.2e-21 106.3 62 77.4
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-21 105.9 62 77.4
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 2.7e-21 105.1 62 77.4
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 2.7e-21 105.1 62 79.0
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 3.6e-21 104.8 60 80.0
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 4.7e-21 104.4 62 77.4
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 6.8e-20 100.5 62 74.2
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.5e-19 99.4 65 69.2
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 5.7e-19 97.4 63 73.0
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 7.5e-19 97.1 51 84.3
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 2.4e-17 92.0 115 46.1
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-15 84.7 47 83.0
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 2.3e-12 75.5 61 52.5
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 4.0e-12 74.7 32 100.0
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 8.9e-12 73.6 65 52.3
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 1.2e-11 73.2 66 51.5
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 2.0e-11 72.4 36 83.3
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 4.4e-11 71.2 41 70.7
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 1.7e-10 69.3 35 82.9
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 2.8e-10 68.6 35 82.9
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.8e-10 68.6 35 82.9
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 4.9e-10 67.8 35 80.0
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 4.9e-10 67.8 36 75.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 8.3e-10 67.0 35 80.0
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 1.4e-09 66.2 61 50.8
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 1.8e-09 65.9 35 74.3
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 3.5e-08 61.6 39 64.1
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 4.5e-08 61.2 59 47.5
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 2.9e-07 58.5 35 65.7
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 2.9e-07 58.5 35 68.6
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.9e-07 58.5 36 69.4
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.9e-06 55.8 36 61.1


User provided reference genes

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