Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020597.2 Cucumis melo HOM05D001463 ORTHO05D001282 4.1e-117 424.9 232 100.0
ClCG03G001170 Citrullus lanatus HOM05D001463 ORTHO05D001282 1.7e-62 243.4 160 87.5
CsaV3_1G035720 Cucumis sativus L. HOM05D001463 ORTHO05D001282 1.2e-55 220.7 136 94.9
Sed0002411 Sechium edule HOM05D001463 ORTHO05D001282 1.9e-45 186.8 149 68.5
CsaV3_1G034620 Cucumis sativus L. HOM05D001463 ORTHO05D001282 5.8e-31 138.7 71 97.2
FAN25G3555 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.7e-20 103.2 193 38.3
FAN16G2865 Fragaria x ananassa HOM05D001463 ORTHO05D001282 5.1e-19 99.0 196 36.7
RcHm_v2.0_Chr5g0066931 Rosa chinensis HOM05D001463 ORTHO05D001282 7.4e-18 95.1 157 40.1
CiPaw.13G087300 Carya illinoinensis HOM05D001463 ORTHO05D001282 9.7e-18 94.7 163 41.1
FAN21G1105 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.8e-17 93.2 154 39.6
Haze_24203 Corylus avellana HOM05D001463 ORTHO05D001282 8.2e-17 91.7 162 41.4
Prupe.6G067400 Prunus persica HOM05D001463 ORTHO05D001282 1.1e-16 91.3 157 40.8
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 2.4e-16 90.1 157 39.5
Eucgr.B02296 Eucalyptus grandis HOM05D001463 ORTHO05D001282 3.1e-16 89.7 158 41.1
Cfa011585 Carpinus fangiana HOM05D001463 ORTHO05D001282 6.9e-16 88.6 162 40.7
Potri.009G038300 Populus trichocarpa HOM05D001463 ORTHO05D001282 6.9e-16 88.6 161 37.9
CiPaw.14G063800 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.2e-15 87.8 123 47.2
GSVIVG01024854001 Vitis vinifera HOM05D001463 ORTHO05D001282 2.0e-15 87.0 159 38.4
CANSAT54G2006 Cannabis sativa HOM05D001463 ORTHO05D001282 3.4e-15 86.3 162 37.7
FvH4_3g37190 Fragaria vesca HOM05D001463 ORTHO05D001282 3.4e-15 86.3 114 46.5
TWI31G0608 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 5.9e-15 85.5 158 39.9
Ciclev10029407m.g Citrus clementina HOM05D001463 ORTHO05D001282 1.7e-14 84.0 161 37.3
FAN11G0374 Fragaria x ananassa HOM05D001463 ORTHO05D001282 2.2e-14 83.6 114 45.6
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 3.8e-14 82.8 142 41.5
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 5.0e-14 82.4 141 40.4
MD03G1083100 Malus domestica HOM05D001463 ORTHO05D001282 5.0e-14 82.4 157 38.9
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.1e-13 81.3 140 42.1
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 2.5e-13 80.1 139 39.6
MD11G1091200 Malus domestica HOM05D001463 ORTHO05D001282 2.5e-13 80.1 157 36.9
THA.LOC104810744 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.5e-13 80.1 140 40.0
Nn2g13529 Nelumbo nucifera HOM05D001463 ORTHO05D001282 3.2e-13 79.7 153 39.9
Thecc.09G312500 Theobroma cacao HOM05D001463 ORTHO05D001282 4.2e-13 79.3 158 38.6
AT5G59080 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 9.4e-13 78.2 142 39.4
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 9.4e-13 78.2 143 39.2
BcaC04g19809 Brassica carinata HOM05D001463 ORTHO05D001282 1.2e-12 77.8 139 39.6
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.2e-12 77.8 140 39.3
THA.LOC104814892 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 3.6e-12 76.3 139 40.3
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 6.1e-12 75.5 140 38.6
A03p11840 Brassica napus HOM05D001463 ORTHO05D001282 7.9e-12 75.1 139 37.4
BcaC03g14033 Brassica carinata HOM05D001463 ORTHO05D001282 1.0e-11 74.7 140 37.9
A10p16390 Brassica napus HOM05D001463 ORTHO05D001282 1.0e-11 74.7 139 38.8
C02p12720 Brassica napus HOM05D001463 ORTHO05D001282 1.0e-11 74.7 140 37.9
BolC2t07370H Brassica oleracea HOM05D001463 ORTHO05D001282 1.0e-11 74.7 140 37.9
BraA10t43726Z Brassica rapa HOM05D001463 ORTHO05D001282 1.0e-11 74.7 139 38.8
C09p51470 Brassica napus HOM05D001463 ORTHO05D001282 1.4e-11 74.3 139 38.8
BolC3t13837H Brassica oleracea HOM05D001463 ORTHO05D001282 1.4e-11 74.3 139 37.4
BolC9t58006H Brassica oleracea HOM05D001463 ORTHO05D001282 1.4e-11 74.3 139 38.8
BraA03t10495Z Brassica rapa HOM05D001463 ORTHO05D001282 1.4e-11 74.3 139 37.4
Duzib150G0778 Durio zibethinus HOM05D001463 ORTHO05D001282 1.4e-11 74.3 159 37.1
TWI56G1206 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 1.4e-11 74.3 115 43.5
A02p07300 Brassica napus HOM05D001463 ORTHO05D001282 2.3e-11 73.6 140 37.9
CARHR285550 Cardamine hirsuta HOM05D001463 ORTHO05D001282 2.3e-11 73.6 139 38.8
COL.COLO4_18603 Corchorus olitorius HOM05D001463 ORTHO05D001282 3.0e-11 73.2 159 36.5
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 3.9e-11 72.8 137 36.5
Sabra09G0027300 Salix brachista HOM05D001463 ORTHO05D001282 8.8e-11 71.6 198 30.3
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 1.1e-10 71.2 141 36.9
Duzib168G0381 Durio zibethinus HOM05D001463 ORTHO05D001282 1.1e-10 71.2 123 42.3
C03p13900 Brassica napus HOM05D001463 ORTHO05D001282 1.5e-10 70.9 139 36.7
BraA02t05810Z Brassica rapa HOM05D001463 ORTHO05D001282 2.0e-10 70.5 127 38.6
Solyc09g011470.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 2.6e-10 70.1 158 35.4
BcaB05g22486 Brassica carinata HOM05D001463 ORTHO05D001282 5.7e-10 68.9 140 36.4
Duzib106G1514 Durio zibethinus HOM05D001463 ORTHO05D001282 1.3e-09 67.8 162 34.6
Gohir.D07G105300 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.7e-09 67.4 154 37.7
CsaV3_3G034460 Cucumis sativus L. HOM05D001463 ORTHO05D001282 2.2e-09 67.0 152 32.9
Medtr7g065150 Medicago truncatula HOM05D001463 ORTHO05D001282 3.7e-09 66.2 162 34.6
CSS0026922 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 4.8e-09 65.9 161 33.5
Gorai.001G113400 Gossypium raimondii HOM05D001463 ORTHO05D001282 4.8e-09 65.9 154 36.4
PGSC0003DMG400002161 Solanum tuberosum HOM05D001463 ORTHO05D001282 4.8e-09 65.9 158 34.8
GSVIVG01034066001 Vitis vinifera HOM05D001463 ORTHO05D001282 4.8e-09 65.9 165 32.7
Duzib170G0250 Durio zibethinus HOM05D001463 ORTHO05D001282 6.3e-09 65.5 112 44.6
Hund04907 Selenicereus undatus HOM05D001463 ORTHO05D001282 8.2e-09 65.1 153 35.3
Atru.chr3.4029 Acer truncatum HOM05D001463 ORTHO05D001282 1.1e-08 64.7 133 38.3
Gohir.A07G101300 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.1e-08 64.7 158 36.1
TAR369G0036 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.4e-08 64.3 168 31.5
TAR623G0111 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.4e-08 64.3 167 34.1
Gohir.D09G156600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.8e-08 63.9 160 33.1
AUR62020062 Chenopodium quinoa HOM05D001463 ORTHO05D001282 2.4e-08 63.5 154 35.7
HanXRQChr06g0177681 Helianthus annuus HOM05D001463 ORTHO05D001282 3.1e-08 63.2 156 33.3
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 3.1e-08 63.2 152 32.9
Gohir.A09G160900 Gossypium hirsutum HOM05D001463 ORTHO05D001282 4.1e-08 62.8 162 32.1
Eucgr.K03042 Eucalyptus grandis HOM05D001463 ORTHO05D001282 5.3e-08 62.4 163 33.1
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 5.3e-08 62.4 160 33.1
VMungo1383G3326 Vigna mungo HOM05D001463 ORTHO05D001282 5.3e-08 62.4 146 31.5
CARHR211340 Cardamine hirsuta HOM05D001463 ORTHO05D001282 7.0e-08 62.0 156 32.7
PGR102G2576 Punica granatum HOM05D001463 ORTHO05D001282 7.0e-08 62.0 118 39.0
Gorai.011G273400 Gossypium raimondii HOM05D001463 ORTHO05D001282 9.1e-08 61.6 144 35.4
Lalb_Chr19g0125021 Lupinus albus HOM05D001463 ORTHO05D001282 9.1e-08 61.6 159 33.3
Sopen09g006220 Solanum pennellii HOM05D001463 ORTHO05D001282 9.1e-08 61.6 117 38.5
Thecc.05G028900 Theobroma cacao HOM05D001463 ORTHO05D001282 9.1e-08 61.6 165 34.5
Actinidia02381 Actinidia chinensis HOM05D001463 ORTHO05D001282 1.2e-07 61.2 145 34.5
Gohir.D10G238356 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.2e-07 61.2 149 34.9
THA.LOC104827030 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 1.2e-07 61.2 167 32.3
Gorai.006G178100 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.5e-07 60.8 162 32.1
arahy.Tifrunner.gnm1.ann1.1EL8LN Arachis hypogaea HOM05D001463 ORTHO05D001282 2.0e-07 60.5 154 34.4
BcaB01g04602 Brassica carinata HOM05D001463 ORTHO05D001282 2.0e-07 60.5 99 41.4
CSS0002888 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 2.0e-07 60.5 164 35.4
CSS0026065 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 2.0e-07 60.5 153 35.3
AT5G02020 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 2.6e-07 60.1 158 32.3
Glyma.18G189900 Glycine max HOM05D001463 ORTHO05D001282 2.6e-07 60.1 111 38.7
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 2.6e-07 60.1 151 33.1
Manes.08G082200 Manihot esculenta HOM05D001463 ORTHO05D001282 2.6e-07 60.1 161 30.4
arahy.Tifrunner.gnm1.ann1.J6Z8IZ Arachis hypogaea HOM05D001463 ORTHO05D001282 3.4e-07 59.7 163 34.4
CANSAT35G0720 Cannabis sativa HOM05D001463 ORTHO05D001282 3.4e-07 59.7 160 31.9
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 3.4e-07 59.7 148 31.1
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 3.4e-07 59.7 157 33.1
Dinv37114 Davidia involucrata HOM05D001463 ORTHO05D001282 3.4e-07 59.7 163 31.9
Lalb_Chr01g0022791 Lupinus albus HOM05D001463 ORTHO05D001282 3.4e-07 59.7 147 34.7
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 3.4e-07 59.7 145 42.1
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 4.5e-07 59.3 156 32.7
Duzib093G1451 Durio zibethinus HOM05D001463 ORTHO05D001282 4.5e-07 59.3 164 32.3
MELO3C003186.2 Cucumis melo HOM05D001463 ORTHO05D001282 5.9e-07 58.9 163 31.9
Hma1.2p1_0671F.1_g200570 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 5.9e-07 58.9 162 32.7
Atru.chr8.2091 Acer truncatum HOM05D001463 ORTHO05D001282 7.7e-07 58.5 119 37.8
CSS0044115 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 7.7e-07 58.5 158 35.4
CiPaw.10G149400 Carya illinoinensis HOM05D001463 ORTHO05D001282 7.7e-07 58.5 149 32.2
FAN14G0695 Fragaria x ananassa HOM05D001463 ORTHO05D001282 7.7e-07 58.5 173 30.6
Glyma.03G073400 Glycine max HOM05D001463 ORTHO05D001282 7.7e-07 58.5 158 32.3
THA.LOC104823267 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 7.7e-07 58.5 159 34.0
AUR62001723 Chenopodium quinoa HOM05D001463 ORTHO05D001282 1.0e-06 58.2 168 32.7
Ciclev10013013m.g Citrus clementina HOM05D001463 ORTHO05D001282 1.0e-06 58.2 168 30.4
Hma1.2p1_0026F.1_g016620 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 1.0e-06 58.2 141 38.3
Manes.09G098500 Manihot esculenta HOM05D001463 ORTHO05D001282 1.0e-06 58.2 161 31.1
Sc21g0006110 Simmondsia chinensis HOM05D001463 ORTHO05D001282 1.0e-06 58.2 84 47.6
arahy.Tifrunner.gnm1.ann1.9SAY5Z Arachis hypogaea HOM05D001463 ORTHO05D001282 1.3e-06 57.8 157 33.8
HanXRQChr14g0458451 Helianthus annuus HOM05D001463 ORTHO05D001282 1.3e-06 57.8 139 31.7
Potri.006G092400 Populus trichocarpa HOM05D001463 ORTHO05D001282 1.3e-06 57.8 164 34.8
CsaV3_4G025610 Cucumis sativus L. HOM05D001463 ORTHO05D001282 1.7e-06 57.4 164 31.1
Duzib106G1527 Durio zibethinus HOM05D001463 ORTHO05D001282 1.7e-06 57.4 100 59.0
Gohir.D11G346900 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.7e-06 57.4 160 33.1
Lj1A946T36 Lonicera japonica HOM05D001463 ORTHO05D001282 1.7e-06 57.4 93 40.9
BcaB01g00963 Brassica carinata HOM05D001463 ORTHO05D001282 2.2e-06 57.0 141 36.9
BcaB05g23523 Brassica carinata HOM05D001463 ORTHO05D001282 2.2e-06 57.0 139 36.7
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 2.2e-06 57.0 156 32.1
Duzib106G1623 Durio zibethinus HOM05D001463 ORTHO05D001282 2.2e-06 57.0 129 50.4
BraA03t09436Z Brassica rapa HOM05D001463 ORTHO05D001282 2.9e-06 56.6 151 38.4
Peaxi162Scf00140g01313 Petunia axillaris HOM05D001463 ORTHO05D001282 2.9e-06 56.6 167 29.9
Prupe.6G264600 Prunus persica HOM05D001463 ORTHO05D001282 2.9e-06 56.6 164 34.8
TAR636G3077 Trochodendron aralioides HOM05D001463 ORTHO05D001282 2.9e-06 56.6 169 29.0
arahy.Tifrunner.gnm1.ann1.DI08LN Arachis hypogaea HOM05D001463 ORTHO05D001282 3.8e-06 56.2 165 33.3
A06p20670 Brassica napus HOM05D001463 ORTHO05D001282 3.8e-06 56.2 139 36.0
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 3.8e-06 56.2 143 32.9
AT3G46880 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 5.0e-06 55.8 138 38.4
BcaC01g01877 Brassica carinata HOM05D001463 ORTHO05D001282 5.0e-06 55.8 140 35.7
C03p00740 Brassica napus HOM05D001463 ORTHO05D001282 5.0e-06 55.8 150 38.7
BolC3t12637H Brassica oleracea HOM05D001463 ORTHO05D001282 5.0e-06 55.8 150 38.7
CiPaw.09G201400 Carya illinoinensis HOM05D001463 ORTHO05D001282 5.0e-06 55.8 160 31.2
Cc06_g02060 Coffea canephora HOM05D001463 ORTHO05D001282 5.0e-06 55.8 167 30.5
Duzib106G2001 Durio zibethinus HOM05D001463 ORTHO05D001282 5.0e-06 55.8 100 58.0
Gorai.007G377300 Gossypium raimondii HOM05D001463 ORTHO05D001282 5.0e-06 55.8 160 32.5
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 5.0e-06 55.8 157 43.9
TPR.G34922 Trifolium pratense HOM05D001463 ORTHO05D001282 5.0e-06 55.8 154 31.8
MSTRG.5625 Avicennia marina HOM05D001463 ORTHO05D001282 6.5e-06 55.5 158 31.6
Carub.0005s1310 Capsella rubella HOM05D001463 ORTHO05D001282 6.5e-06 55.5 97 42.3
Cfa017303 Carpinus fangiana HOM05D001463 ORTHO05D001282 6.5e-06 55.5 163 30.1
Phvul.008G114000 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 6.5e-06 55.5 155 29.0
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 6.5e-06 55.5 145 31.7
Sed0014683 Sechium edule HOM05D001463 ORTHO05D001282 6.5e-06 55.5 162 29.6
EL10Ac7g16089 Beta vulgaris HOM05D001463 ORTHO05D001282 8.5e-06 55.1 129 34.9
ClCG04G007570 Citrullus lanatus HOM05D001463 ORTHO05D001282 8.5e-06 55.1 164 30.5
Lj3g0027625 Lotus japonicus HOM05D001463 ORTHO05D001282 8.5e-06 55.1 161 34.2
MD04G1139000 Malus domestica HOM05D001463 ORTHO05D001282 8.5e-06 55.1 165 33.9


User provided reference genes

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