Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.3e-39 163.7 86 100.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 6.3e-39 163.7 86 100.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.4e-38 161.8 86 98.8
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.5e-37 157.5 86 95.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 7.2e-35 150.2 86 88.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.1e-34 148.7 85 80.0
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 88.4
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 81.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 80.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 80.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 80.2
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 3.0e-33 144.8 86 83.7
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 5.2e-33 144.1 86 88.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 5.2e-33 144.1 86 81.4
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 8.8e-33 143.3 86 82.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-32 142.9 86 79.1
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.1e-32 142.9 86 80.2
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.5e-32 142.5 86 84.9
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 2.0e-32 142.1 86 79.1
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.6e-32 141.7 86 77.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 4.4e-32 141.0 82 87.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 5.7e-32 140.6 86 81.4
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 9.7e-32 139.8 86 84.9
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 9.7e-32 139.8 88 83.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.7e-31 139.0 86 75.6
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.8e-31 138.3 82 79.3
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 3.7e-31 137.9 86 79.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.3e-31 137.1 82 78.0
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 8.2e-31 136.7 82 78.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 81.4
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 83 75.9
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 2.4e-30 135.2 82 84.1
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 4.1e-30 134.4 91 71.4
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 5.3e-30 134.0 84 72.6
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 7.0e-30 133.7 82 74.4
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 7.0e-30 133.7 76 92.1
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 83.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 9.1e-30 133.3 82 75.6
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 9.1e-30 133.3 79 77.2
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.6e-29 132.5 91 70.3
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 2.0e-29 132.1 85 82.4
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.0e-29 132.1 82 82.9
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.6e-29 131.7 81 76.5
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.0e-28 129.8 86 79.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.0e-28 129.8 85 70.6
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.7e-28 129.0 79 74.7
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-28 129.0 79 74.7
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 67.4
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.9e-28 128.3 76 88.2
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.8e-28 127.9 79 74.7
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.8e-28 127.9 79 74.7
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.8e-28 127.9 83 72.3
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.8e-28 127.9 83 72.3
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.0e-28 127.5 78 74.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 8.5e-28 126.7 86 67.4
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.9e-27 125.6 86 65.1
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.5e-27 125.2 86 66.3
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.5e-27 125.2 83 79.5
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.5e-27 125.2 82 81.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 3.2e-27 124.8 82 72.0
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 66.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.2e-27 124.8 82 68.3
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 5.5e-27 124.0 86 64.0
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.5e-27 124.0 76 72.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 5.5e-27 124.0 86 66.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 7.2e-27 123.6 86 67.4
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 7.2e-27 123.6 83 69.9
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 9.4e-27 123.2 82 73.2
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 9.4e-27 123.2 78 70.5
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 9.4e-27 123.2 78 70.5
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.2e-26 122.9 82 70.7
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 83 69.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 83 69.9
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.6e-26 122.5 83 69.9
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 64.0
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.7e-26 121.7 83 77.1
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 3.6e-26 121.3 68 83.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.7e-26 120.9 83 65.1
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 62.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 64.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 76 71.1
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 66.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.0e-25 119.8 84 64.3
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 66.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-25 119.4 84 63.1
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-25 119.4 73 75.3
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.4e-25 119.4 68 79.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 67.1
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 86 66.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 3.0e-25 118.2 95 57.9
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 5.2e-25 117.5 84 61.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 5.2e-25 117.5 82 68.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 6.7e-25 117.1 82 67.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.5e-24 115.9 85 74.1
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.0e-24 115.5 98 56.1
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.0e-24 115.5 75 64.0
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.0e-24 115.5 82 64.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.0e-24 115.5 77 67.5
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.6e-24 115.2 82 67.1
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.6e-24 115.2 79 67.1
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 3.3e-24 114.8 76 67.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.3e-24 114.8 74 70.3
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.4e-24 114.4 77 66.2
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 4.4e-24 114.4 77 66.2
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 5.7e-24 114.0 79 72.2
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.7e-23 112.5 63 79.4
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.7e-23 112.5 87 60.9
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.7e-23 111.3 70 72.9
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.7e-23 111.3 70 72.9
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.7e-23 111.3 76 67.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.1e-22 109.8 115 48.7
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.4e-22 109.4 86 59.3
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.8e-22 109.0 80 71.2
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.8e-22 109.0 95 66.3
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.8e-22 109.0 86 59.3
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.8e-22 109.0 87 58.6
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.4e-22 108.6 82 64.6
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 3.1e-22 108.2 68 85.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 4.1e-22 107.8 69 72.5
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 5.3e-22 107.5 96 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 9.1e-22 106.7 78 57.7
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 9.1e-22 106.7 73 61.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.0e-21 105.5 77 61.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 2.0e-21 105.5 84 64.3
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.7e-21 105.1 70 67.1
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 5.9e-21 104.0 72 66.7
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.7e-20 102.4 60 78.3
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 8.5e-20 100.1 65 67.7
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 4.2e-19 97.8 72 63.9
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.6e-18 94.7 83 60.2
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 3.6e-18 94.7 53 79.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 4.7e-18 94.4 64 68.8
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 4.7e-18 94.4 52 80.8
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.1e-18 94.0 82 61.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 8.0e-18 93.6 87 54.0
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.8e-17 92.4 71 64.8
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 3.0e-17 91.7 71 60.6
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.8e-17 90.5 54 75.9
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.5e-16 89.4 54 72.2
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.4e-16 88.2 72 50.0
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.8e-15 85.1 56 71.4
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.8e-15 85.1 71 47.9
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 2.8e-15 85.1 76 59.2
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 6.3e-15 84.0 52 71.2
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-14 82.4 52 75.0
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.2e-13 79.7 52 73.1
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 4.5e-13 77.8 54 61.1
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 4.5e-13 77.8 97 45.4
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.0e-12 76.6 70 55.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 6.6e-12 73.9 97 42.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 8.6e-12 73.6 72 54.2
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.2e-10 69.7 47 61.7
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 6.1e-10 67.4 59 59.3
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.0e-09 66.6 62 45.2
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.4e-09 66.2 116 40.5
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.4e-09 66.2 68 54.4
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.1e-06 56.6 59 42.4
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 4.1e-06 54.7 59 50.8


User provided reference genes

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