Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.5e-220 769.2 403 100.0
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.8e-206 721.8 403 94.3
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.7e-182 641.7 406 84.2
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 4.6e-132 475.3 408 69.1
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 9.0e-104 381.3 406 59.1
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.9e-46 190.3 431 39.2
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.4e-42 176.4 432 37.0
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 8.3e-41 172.2 452 37.4
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 1.8e-40 171.0 468 36.3
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.4e-40 170.6 386 36.3
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.4e-40 169.5 466 36.5
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 7.0e-40 169.1 445 35.1
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.0e-39 167.5 460 35.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.5e-39 166.8 372 39.2
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 3.5e-39 166.8 404 38.6
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 7.8e-39 165.6 443 34.5
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.9e-38 163.7 441 36.3
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.8e-38 163.3 425 36.5
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.6e-38 162.5 454 35.2
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 4.3e-37 159.8 446 34.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.7e-36 156.4 421 34.4
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-35 155.2 445 34.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.4e-35 154.8 415 36.4
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.4e-34 149.8 416 35.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.4e-34 149.8 414 33.8
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-33 148.3 375 36.0
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 2.9e-33 147.1 451 33.7
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.4e-32 144.1 365 37.8
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.1e-32 143.3 416 35.3
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.2e-31 141.7 399 36.8
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 4.6e-31 139.8 416 35.8
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.3e-30 138.3 376 34.8
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.3e-30 137.5 435 33.3
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 5.0e-30 136.3 466 32.2
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.6e-30 136.0 376 34.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 4.7e-28 129.8 389 31.4
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.4e-27 128.3 443 33.0
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.8e-27 127.9 407 32.7
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.3e-27 127.5 446 32.3
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 8.9e-27 125.6 443 33.0
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 5.8e-26 122.9 446 32.7
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 9.8e-26 122.1 390 32.8
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.3e-25 121.7 437 33.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 6.4e-25 119.4 419 33.4
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.4e-24 117.5 415 30.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 3.2e-24 117.1 435 30.1
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.2e-23 115.2 392 30.9
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.6e-23 114.8 435 32.9
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 4.6e-23 113.2 455 31.0
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 6.0e-23 112.8 426 32.6
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 6.0e-23 112.8 431 30.4
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 6.0e-23 112.8 418 30.1
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 7.8e-23 112.5 427 32.3
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 7.8e-23 112.5 357 33.9
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-22 112.1 400 29.2
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.3e-22 110.9 400 29.0
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 2.3e-22 110.9 448 32.6
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 8.6e-22 109.0 316 32.0
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 4.3e-21 106.7 434 29.7
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.6e-20 104.8 395 29.6
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 2.1e-20 104.4 453 30.9
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 6.2e-20 102.8 402 30.6
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 8.1e-20 102.4 381 29.1
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 8.1e-20 102.4 282 34.0
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 4.0e-19 100.1 429 30.1
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 8.9e-19 99.0 387 31.0
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 1.2e-18 98.6 465 30.1
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.5e-18 98.2 453 30.0
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.5e-18 98.2 440 30.2
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.6e-18 97.4 393 29.5
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 2.6e-18 97.4 362 30.1
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 2.6e-18 97.4 321 32.4
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.4e-18 97.1 383 29.8
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.4e-18 96.7 472 30.9
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 4.4e-18 96.7 416 29.6
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 4.4e-18 96.7 445 30.1
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 9.9e-18 95.5 419 28.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.3e-17 95.1 286 33.2
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.7e-17 94.7 388 27.6
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.2e-17 94.4 342 32.7
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.2e-17 94.4 430 30.0
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 2.2e-17 94.4 422 28.2
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.9e-17 94.0 375 32.0
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 8.3e-17 92.4 281 33.1
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 4.1e-16 90.1 282 32.6
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.1e-16 90.1 311 29.9
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.1e-16 89.4 352 29.8
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.6e-15 88.2 390 26.7
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 2.1e-15 87.8 407 30.0
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 2.7e-15 87.4 413 28.1
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 4.6e-15 86.7 388 28.1
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 4.6e-15 86.7 428 27.8
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.3e-14 85.1 376 26.3
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.3e-14 84.3 423 31.2
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.0e-14 84.0 149 38.3
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 6.6e-14 82.8 345 29.3
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 6.6e-14 82.8 393 27.7
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 6.6e-14 82.8 412 27.4
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 1.1e-13 82.0 416 29.8
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.5e-13 81.6 415 29.6
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 1.5e-13 81.6 400 29.8
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.9e-13 81.3 161 36.6
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 3.3e-13 80.5 254 32.3
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 4.3e-13 80.1 424 25.2
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 4.3e-13 80.1 437 27.9
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-12 78.6 407 25.8
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-12 78.6 405 25.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.1e-12 77.8 424 27.1
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 2.8e-12 77.4 418 28.9
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 2.8e-12 77.4 423 25.8
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 3.6e-12 77.0 152 35.5
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.7e-12 76.6 417 25.2
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.7e-12 76.6 412 24.8
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 4.7e-12 76.6 201 35.3
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.2e-12 76.3 289 30.4
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 6.2e-12 76.3 380 27.9
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 8.1e-12 75.9 348 28.2
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.4e-11 75.1 416 26.2
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 1.4e-11 75.1 398 26.6
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 2.4e-11 74.3 400 26.5
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 3.1e-11 73.9 322 31.7
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 4.0e-11 73.6 365 28.2
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 5.2e-11 73.2 403 24.6
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 5.2e-11 73.2 229 32.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 5.2e-11 73.2 229 32.3
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 6.8e-11 72.8 389 27.0
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 8.9e-11 72.4 289 29.4
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.2e-10 72.0 374 28.3
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.2e-10 72.0 373 27.9
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 2.0e-10 71.2 388 26.0
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.6e-10 70.9 383 27.4
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 4.4e-10 70.1 398 28.9
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 4.4e-10 70.1 398 28.9
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 4.4e-10 70.1 331 29.0
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 5.8e-10 69.7 382 27.0
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 5.8e-10 69.7 307 27.4
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 5.8e-10 69.7 429 26.1
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 2.2e-09 67.8 394 29.7
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.9e-09 67.4 376 26.1
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.9e-09 66.6 372 23.1
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.4e-09 66.2 266 28.2
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 8.4e-09 65.9 310 28.4
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 8.4e-09 65.9 162 34.0
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.1e-08 65.5 396 28.3
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.4e-08 65.1 384 25.3
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 1.4e-08 65.1 130 36.2
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.9e-08 64.7 385 26.0
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 2.4e-08 64.3 404 26.5
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.4e-08 64.3 373 26.5
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 3.2e-08 63.9 402 25.4
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.2e-08 63.9 266 27.8
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.1e-08 63.5 431 25.3
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 4.1e-08 63.5 431 25.3
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 4.1e-08 63.5 277 28.9
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 9.2e-08 62.4 353 26.3
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.2e-07 62.0 253 28.9
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 1.6e-07 61.6 381 28.9
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.1e-07 61.2 147 36.1
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 2.1e-07 61.2 395 25.1
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 3.5e-07 60.5 389 28.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.5e-07 60.5 413 25.4
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 4.6e-07 60.1 374 27.0
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 7.8e-07 59.3 395 25.8
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.0e-06 58.9 392 25.8
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.0e-06 58.9 356 23.9
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.9e-06 57.0 418 24.9
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 5.1e-06 56.6 398 24.9


User provided reference genes

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