Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020502.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.9e-100 368.2 198 100.0
CsaV3_1G036680 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.2e-80 303.5 199 86.9
ClCG03G000230 Citrullus lanatus HOM05D002277 ORTHO05D001770 3.1e-49 199.1 209 65.1
Sed0018093 Sechium edule HOM05D002277 ORTHO05D001770 1.8e-33 146.7 204 53.4
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.9e-15 86.3 200 38.0
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 8.5e-15 84.7 199 36.2
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.0e-12 77.8 147 39.5
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 1.0e-12 77.8 203 33.5
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 4.0e-12 75.9 167 39.5
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 5.2e-12 75.5 91 48.4
Lalb_Chr10g0103731 Lupinus albus HOM05D002277 ORTHO05D001770 5.2e-12 75.5 165 37.6
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 1.5e-11 73.9 192 35.4
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.5e-11 73.9 155 37.4
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 2.0e-11 73.6 114 49.1
CiPaw.13G065900 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.6e-11 73.2 185 35.1
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.6e-11 73.2 155 37.4
Lalb_Chr17g0345561 Lupinus albus HOM05D002277 ORTHO05D001770 4.4e-11 72.4 157 34.4
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 5.7e-11 72.0 166 38.0
Actinidia34486 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.3e-10 70.9 179 33.5
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.3e-10 70.9 208 31.7
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.7e-10 70.5 191 36.1
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.7e-10 70.5 186 32.3
LjContig00141g0024890 Lotus japonicus HOM05D002277 ORTHO05D001770 2.8e-10 69.7 97 44.3
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 4.9e-10 68.9 146 37.7
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 6.3e-10 68.6 160 34.4
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 8.3e-10 68.2 160 35.0
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 8.3e-10 68.2 166 34.3
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 8.3e-10 68.2 185 35.7
Ah.08g215440 Amaranthus hybridus HOM05D000060 ORTHO05D004654 1.1e-09 67.8 133 39.1
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 1.1e-09 67.8 170 40.0
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 1.4e-09 67.4 173 37.0
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.8e-09 67.0 179 28.5
Manes.18G140500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.8e-09 67.0 182 36.3
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.4e-09 66.6 147 36.1
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 4.1e-09 65.9 169 36.7
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 5.4e-09 65.5 195 33.8
TWI31G0347 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 7.0e-09 65.1 154 38.3
BcaB02g06768 Brassica carinata HOM05D010829 ORTHO05D001770 9.2e-09 64.7 175 36.6
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 9.2e-09 64.7 193 32.1
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.2e-09 64.7 116 43.1
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.2e-09 64.7 99 43.4
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 9.2e-09 64.7 184 33.2
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.2e-08 64.3 130 36.9
Ciclev10002474m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.6e-08 63.9 182 30.8
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-08 63.9 155 37.4
QL01p025249 Quercus lobata HOM05D002277 ORTHO05D001770 1.6e-08 63.9 48 64.6
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 2.0e-08 63.5 175 32.0
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 2.0e-08 63.5 175 32.0
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 2.0e-08 63.5 175 32.0
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 2.0e-08 63.5 186 32.3
FAN25G3585 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.0e-08 63.5 92 43.5
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.0e-08 63.5 99 42.4
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 2.0e-08 63.5 189 32.3
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 2.0e-08 63.5 178 33.7
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.7e-08 63.2 145 36.6
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.5e-08 62.8 57 56.1
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.9e-08 62.0 99 42.4
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 5.9e-08 62.0 180 34.4
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 7.7e-08 61.6 171 37.4
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 7.7e-08 61.6 107 42.1
Medtr5g075040 Medicago truncatula HOM05D002277 ORTHO05D001770 7.7e-08 61.6 59 55.9
Psat2g051880 Pisum sativum HOM05D002277 ORTHO05D001770 7.7e-08 61.6 96 44.8
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 7.7e-08 61.6 82 45.1
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.0e-07 61.2 155 34.2
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.0e-07 61.2 157 40.1
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.0e-07 61.2 83 43.4
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.0e-07 61.2 165 30.9
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.0e-07 61.2 86 41.9
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.3e-07 60.8 89 39.3
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.3e-07 60.8 49 61.2
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.3e-07 60.8 49 61.2
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 1.3e-07 60.8 86 41.9
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 1.3e-07 60.8 105 37.1
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 1.7e-07 60.5 184 29.3
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.7e-07 60.5 156 36.5
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.7e-07 60.5 159 39.6
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 2.3e-07 60.1 49 51.0
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 2.3e-07 60.1 96 38.5
VMungo0647G0196 Vigna mungo HOM05D002277 ORTHO05D001770 2.3e-07 60.1 170 34.7
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 2.9e-07 59.7 175 32.0
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 2.9e-07 59.7 175 32.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.9e-07 59.7 92 44.6
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.9e-07 59.7 197 32.0
CANSAT54G0878 Cannabis sativa HOM05D002277 ORTHO05D001770 3.8e-07 59.3 74 41.9
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 3.8e-07 59.3 177 34.5
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.8e-07 59.3 82 42.7
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 3.8e-07 59.3 204 30.4
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 3.8e-07 59.3 47 63.8
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 5.0e-07 58.9 145 37.9
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.0e-07 58.9 146 32.9
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 6.6e-07 58.5 147 36.7
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 6.6e-07 58.5 159 32.1
BraA09t42006Z Brassica rapa HOM05D010829 ORTHO05D001770 6.6e-07 58.5 169 34.3
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 6.6e-07 58.5 189 32.8
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.6e-07 58.5 118 43.2
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 6.6e-07 58.5 147 34.0
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 6.6e-07 58.5 165 33.9
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.6e-07 58.5 165 34.5
Glyma.02G234700 Glycine max HOM05D002277 ORTHO05D001770 8.6e-07 58.2 189 31.7
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 8.6e-07 58.2 95 42.1
Sc12g0000180 Simmondsia chinensis HOM05D002277 ORTHO05D001770 8.6e-07 58.2 109 35.8
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 1.1e-06 57.8 135 36.3
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 1.1e-06 57.8 104 39.4
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 1.1e-06 57.8 152 32.2
Atru.chr1.2541 Acer truncatum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 75 45.3
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 1.5e-06 57.4 169 36.1
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.5e-06 57.4 92 43.5
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.5e-06 57.4 155 35.5
TWI09G0487 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 1.5e-06 57.4 68 50.0
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 1.5e-06 57.4 179 30.2
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 1.9e-06 57.0 182 33.5
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 1.9e-06 57.0 103 37.9
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.9e-06 57.0 82 43.9
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.9e-06 57.0 44 59.1
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 1.9e-06 57.0 146 32.2
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 1.9e-06 57.0 150 34.0
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.9e-06 57.0 78 44.9
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.9e-06 57.0 159 39.0
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 2.5e-06 56.6 144 32.6
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.3e-06 56.2 84 40.5
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 3.3e-06 56.2 84 41.7
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 4.3e-06 55.8 172 36.0
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.3e-06 55.8 94 39.4
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 4.3e-06 55.8 43 58.1
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 4.3e-06 55.8 111 34.2
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 5.6e-06 55.5 68 50.0
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 5.6e-06 55.5 68 50.0
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 5.6e-06 55.5 56 50.0
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 5.6e-06 55.5 96 36.5
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 5.6e-06 55.5 55 52.7
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.6e-06 55.5 188 32.4
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 7.3e-06 55.1 71 46.5
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 7.3e-06 55.1 71 46.5
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 7.3e-06 55.1 51 54.9
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.3e-06 55.1 188 32.4
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 7.3e-06 55.1 119 31.9
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 7.3e-06 55.1 208 31.2
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 7.3e-06 55.1 64 46.9
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 7.3e-06 55.1 141 31.2
THA.LOC104816170 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 7.3e-06 55.1 112 33.9
C08p50890 Brassica napus HOM05D010829 ORTHO05D001770 9.5e-06 54.7 76 44.7
BolC8t52617H Brassica oleracea HOM05D010829 ORTHO05D001770 9.5e-06 54.7 76 44.7
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 9.5e-06 54.7 56 46.4
Oeu027170.1 Olea europaea HOM05D002277 ORTHO05D001770 9.5e-06 54.7 179 30.2
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 9.5e-06 54.7 107 36.4
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 9.5e-06 54.7 223 31.8
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 9.5e-06 54.7 44 54.5


User provided reference genes

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