Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1454.1 787 100.0
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1394.4 787 95.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1359.4 819 91.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1325.8 787 88.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1241.5 787 82.3
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1218.4 787 82.7
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1214.5 788 82.1
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 792 83.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1211.4 788 79.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1208.7 791 81.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1208.0 788 79.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1207.6 794 82.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1205.3 787 81.2
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 787 81.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1203.0 787 81.1
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1199.1 787 81.2
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1198.3 787 78.7
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1195.3 794 81.2
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1195.3 787 78.9
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 787 78.8
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 787 78.3
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1190.6 790 78.7
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1190.6 790 78.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1189.5 787 78.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1185.2 787 78.3
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1185.2 787 78.3
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1185.2 787 79.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1184.9 787 78.5
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1183.3 788 79.7
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1182.5 787 80.7
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1180.2 788 79.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1179.9 788 78.6
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1179.9 785 80.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1177.2 787 79.5
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1172.9 787 79.3
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1171.4 787 80.1
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1167.9 787 79.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1166.0 787 77.4
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1160.6 793 76.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1157.1 792 77.7
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1156.7 787 78.3
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1151.7 788 78.3
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1149.4 787 75.9
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1145.6 824 76.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1145.2 792 76.5
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1144.8 788 78.2
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1143.6 795 75.5
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1141.3 792 76.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1136.3 803 74.7
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1135.9 855 72.5
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1127.1 787 76.5
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1126.3 787 75.1
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1124.8 788 77.3
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1119.0 792 77.0
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1119.0 822 72.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1118.6 792 75.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1112.8 787 76.2
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1111.3 787 72.4
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1110.1 789 73.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1107.0 801 75.9
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1105.1 788 74.4
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1103.2 790 76.6
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1102.4 790 73.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1099.0 790 73.9
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1092.8 735 78.4
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1092.8 789 72.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1092.4 789 72.0
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1092.4 787 71.7
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1092.0 789 72.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1091.6 789 71.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1090.5 789 71.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1090.1 792 74.5
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1089.7 789 71.6
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1089.7 789 71.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1089.3 788 72.6
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1088.9 789 71.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1087.4 788 72.8
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1086.6 789 71.9
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1086.6 787 72.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1086.2 789 71.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1086.2 787 72.2
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1086.2 789 74.1
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1083.9 788 72.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1083.2 789 74.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1082.4 789 71.4
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1082.4 787 70.9
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1081.6 787 70.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1079.7 787 71.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1077.0 812 71.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1076.6 789 71.2
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.2e-311 1072.0 787 74.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 2.4e-310 1068.5 787 73.6
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 6.9e-310 1067.0 789 71.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.2e-309 1066.2 788 72.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-307 1059.7 707 80.3
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-306 1055.8 836 67.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.1e-306 1055.4 788 71.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 8.5e-300 1033.5 760 71.1
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 2.5e-299 1031.9 789 70.1
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 8.8e-297 1023.5 774 70.0
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.0e-292 1010.0 787 66.5
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.6e-290 1002.7 685 77.1
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 6.1e-290 1000.7 800 68.1
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.1e-286 989.9 794 68.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.9e-271 938.7 846 61.5
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.3e-263 913.3 792 62.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.6e-261 906.4 788 59.9
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 2.9e-247 859.0 790 56.6
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.4e-246 856.7 789 54.9
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.7e-245 852.4 785 57.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.0e-244 849.0 616 76.0
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.0e-244 849.0 788 56.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 7.4e-227 791.2 598 68.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.9e-223 779.2 797 53.3
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 8.2e-218 761.1 970 49.7
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 5.1e-204 715.3 689 53.3
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.2e-202 709.9 508 76.6
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.2e-194 683.3 803 47.2
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.3e-191 674.1 590 59.7
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 5.9e-184 648.7 467 74.3
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.0e-172 609.8 592 55.9
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 7.8e-160 568.5 379 80.7
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 6.6e-159 565.5 386 78.8
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.9e-156 555.1 382 79.3
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 3.0e-151 540.0 617 48.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.8e-149 533.5 405 65.4
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 2.1e-144 517.3 579 53.5
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.1e-125 454.1 308 77.9
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.8e-125 453.8 849 34.7
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 9.0e-124 448.7 386 66.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 9.9e-123 445.3 346 69.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.4e-121 441.4 813 32.6
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.0e-111 408.7 289 75.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.0e-103 380.6 276 74.3
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.0e-100 370.2 570 43.7
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.5e-99 366.7 800 31.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.2e-98 364.4 553 42.9
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.9e-98 364.0 277 71.5
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 3.3e-94 350.5 265 68.3
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.2e-81 306.2 299 59.9
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 3.1e-76 290.8 189 78.3
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.5e-75 288.5 220 66.8
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.4e-70 269.6 242 64.5
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 7.7e-67 259.6 244 55.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 4.7e-64 250.4 219 56.2
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 5.2e-63 246.9 178 66.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.0e-58 232.6 427 41.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.1e-57 229.2 243 49.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 7.2e-57 226.5 415 41.4
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.0e-55 222.6 225 56.9
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 7.0e-52 209.9 323 44.0
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.3e-50 204.9 134 76.1
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.6e-48 198.7 154 69.5
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.0e-48 196.4 163 66.3
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.0e-48 196.4 133 69.2
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.0e-47 196.1 304 43.8
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 4.4e-46 190.7 166 60.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.3e-39 168.3 236 44.9
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 8.9e-39 166.4 124 80.6
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 3.7e-37 161.0 336 36.6
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.0e-34 151.4 341 38.7
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.9e-33 148.7 102 72.5
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 9.5e-33 146.4 140 60.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-32 145.2 411 32.8
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.1e-31 142.9 80 83.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 5.2e-31 140.6 85 81.2
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 7.5e-30 136.7 159 49.1
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-25 121.7 74 77.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-25 121.7 74 77.0
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.1e-24 118.6 170 44.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.8e-23 115.5 79 72.2
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.3e-23 115.2 122 48.4
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 5.8e-22 110.5 66 80.3
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 3.7e-21 107.8 172 40.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.3e-18 99.4 179 40.2
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 8.9e-15 86.7 72 65.3
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.9e-10 71.2 53 69.8
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 2.1e-08 65.5 166 33.7


User provided reference genes

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