Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.8e-27 125.2 61 100.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.2e-21 104.4 55 89.1
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 4.2e-21 104.0 55 87.3
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 7.2e-21 103.2 55 87.3
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 7.2e-21 103.2 55 87.3
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 2.7e-20 101.3 55 81.8
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 2.7e-20 101.3 55 85.5
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.6e-20 100.9 55 81.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 6.1e-20 100.1 57 77.2
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.0e-19 99.4 55 78.2
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.0e-19 99.4 55 78.2
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.0e-19 99.4 55 78.2
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.0e-19 99.4 55 78.2
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.8e-19 98.6 55 81.8
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 2.3e-19 98.2 55 78.2
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 80.0
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 80.0
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 80.0
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 78.2
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 76.4
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 3.9e-19 97.4 55 80.0
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 3.9e-19 97.4 58 79.3
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 80.0
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 80.0
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 5.1e-19 97.1 55 76.4
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 81.8
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 81.8
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 74.5
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 74.5
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 78.2
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 6.7e-19 96.7 55 80.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 8.7e-19 96.3 55 76.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.7e-19 96.3 55 76.4
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 8.7e-19 96.3 55 78.2
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 8.7e-19 96.3 55 74.5
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.1e-18 95.9 55 74.5
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.1e-18 95.9 55 78.2
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.1e-18 95.9 55 78.2
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.1e-18 95.9 55 76.4
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 1.1e-18 95.9 55 74.5
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.5e-18 95.5 55 78.2
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.5e-18 95.5 55 76.4
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.5e-18 95.5 55 80.0
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.9e-18 95.1 55 78.2
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 76.4
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 76.4
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 74.5
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 72.7
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 2.5e-18 94.7 55 72.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.3e-18 94.4 55 76.4
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.3e-18 94.4 55 74.5
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.3e-18 94.4 53 84.9
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 3.3e-18 94.4 55 74.5
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 3.3e-18 94.4 55 74.5
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 3.3e-18 94.4 55 74.5
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 4.3e-18 94.0 55 74.5
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 4.3e-18 94.0 55 74.5
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 4.3e-18 94.0 55 74.5
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.7e-18 93.6 55 74.5
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.7e-18 93.6 54 75.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 5.7e-18 93.6 55 78.2
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.7e-18 93.6 55 74.5
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 5.7e-18 93.6 55 76.4
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 5.7e-18 93.6 55 74.5
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 72.7
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 72.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 72.7
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 72.7
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 76.4
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 76.4
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 74.5
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 74.5
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 74.5
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 7.4e-18 93.2 55 76.4
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 9.7e-18 92.8 55 76.4
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 9.7e-18 92.8 55 74.5
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 9.7e-18 92.8 55 72.7
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 9.7e-18 92.8 55 72.7
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.3e-17 92.4 55 72.7
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.3e-17 92.4 55 72.7
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.3e-17 92.4 55 72.7
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 70.9
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 74.5
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 72.7
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 74.5
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 70.9
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.6e-17 92.0 55 70.9
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.2e-17 91.7 55 70.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 2.2e-17 91.7 55 72.7
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.2e-17 91.7 55 70.9
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.8e-17 91.3 55 72.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 3.7e-17 90.9 55 69.1
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 4.8e-17 90.5 55 69.1
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 4.8e-17 90.5 55 70.9
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 6.3e-17 90.1 55 72.7
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 8.2e-17 89.7 57 73.7
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 8.2e-17 89.7 55 70.9
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 8.2e-17 89.7 55 70.9
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.1e-16 89.4 55 69.1
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.1e-16 89.4 55 70.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.1e-16 89.4 55 70.9
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.4e-16 89.0 55 70.9
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.4e-16 89.0 55 70.9
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.8e-16 88.6 48 87.5
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 1.8e-16 88.6 55 70.9
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.1e-16 87.8 55 70.9
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 5.3e-16 87.0 55 69.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.5e-15 85.5 55 65.5
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.5e-15 84.0 55 65.5
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 4.5e-15 84.0 55 67.3
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 1.7e-14 82.0 56 67.9
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.9e-14 81.3 55 63.6
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 3.8e-14 80.9 55 65.5
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 5.0e-14 80.5 55 60.0
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.4e-13 79.0 55 58.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 9.4e-13 76.3 38 89.5
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 6.1e-12 73.6 55 56.4
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 6.7e-11 70.1 60 48.3
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 4.4e-10 67.4 46 63.0
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 3.7e-09 64.3 55 49.1
MELO3C029515.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.4e-08 62.4 34 88.2
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 7.7e-07 56.6 33 72.7
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.0e-06 56.2 54 48.1


User provided reference genes

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