Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.6e-197 692.2 439 100.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.1e-195 686.8 439 99.1
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 2.4e-166 589.3 416 92.8
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.2e-124 449.9 451 62.7
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 3.0e-121 439.5 450 63.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 5.2e-121 438.7 443 65.5
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 8.8e-121 438.0 445 67.6
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 8.8e-121 438.0 450 64.0
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.8e-119 433.0 449 64.8
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.6e-117 427.2 447 62.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.6e-117 427.2 450 67.1
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.0e-117 426.8 448 65.6
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.5e-117 426.0 444 64.9
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 7.7e-117 424.9 441 61.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 3.8e-116 422.5 444 64.0
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.5e-116 421.8 456 56.6
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.2e-114 417.5 447 63.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.7e-114 416.4 451 66.3
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.7e-114 416.4 449 57.9
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.8e-113 413.7 448 58.9
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.0e-113 412.9 448 66.3
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.5e-112 410.6 455 64.4
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.6e-112 409.8 441 63.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 5.7e-112 408.7 458 60.3
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 7.5e-112 408.3 446 62.8
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 9.8e-112 407.9 465 55.1
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 3.1e-110 402.9 441 59.2
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 4.1e-110 402.5 451 64.5
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 5.4e-110 402.1 441 65.3
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 7.0e-110 401.7 460 57.4
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-109 401.0 450 65.6
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-109 400.6 457 56.5
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-109 400.6 457 56.5
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.7e-109 399.8 441 62.4
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 4.5e-109 399.1 452 57.7
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 1.3e-108 397.5 447 64.2
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.9e-108 396.4 440 65.0
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.9e-108 396.4 443 57.8
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.2e-107 392.5 444 59.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 3.6e-106 389.4 452 58.6
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.8e-105 385.2 441 63.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.6e-104 383.3 451 61.0
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-104 383.3 441 64.6
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.2e-103 380.2 448 58.5
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.3e-103 378.6 455 59.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.6e-101 374.0 445 59.1
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.3e-100 370.2 428 62.1
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.5e-99 366.7 428 65.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 9.5e-99 364.8 440 61.1
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 9.5e-99 364.8 440 61.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.6e-98 364.0 441 57.8
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.8e-98 363.2 425 48.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.6e-98 362.8 444 57.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.4e-97 360.9 444 57.4
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 3.1e-97 359.8 446 54.7
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 8.3e-95 351.7 444 52.3
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.9e-94 350.5 442 59.7
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.4e-94 350.1 444 56.8
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 4.1e-94 349.4 459 55.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.9e-91 340.5 410 58.8
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.8e-88 328.2 440 44.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 7.8e-85 318.5 450 57.8
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.2e-82 311.2 460 51.1
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 3.6e-82 309.7 442 57.0
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 1.1e-75 288.1 377 56.8
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 7.3e-75 285.4 441 50.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.6e-74 283.1 231 63.2
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.1e-74 282.0 449 40.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.4e-73 281.2 440 44.1
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.6e-72 276.9 417 54.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 8.4e-71 271.9 436 52.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.4e-70 269.2 458 50.4
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 7.1e-70 268.9 440 41.4
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.9e-68 263.1 434 43.5
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 4.8e-58 229.6 439 46.2
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.0e-56 224.2 459 48.1
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.2e-55 220.7 463 51.0
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-51 206.8 129 73.6
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-51 206.8 129 73.6
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.3e-50 204.9 359 51.5
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 8.7e-44 182.2 299 41.8
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 9.0e-41 172.2 122 60.7
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.0e-40 171.0 267 40.4
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 5.0e-39 166.4 204 45.6
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.4e-39 165.6 176 47.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.1e-38 165.2 147 53.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 122 59.8
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.2e-38 163.7 122 60.7
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.2e-38 163.3 122 59.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.2e-38 163.3 122 59.8
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.2e-38 163.3 122 59.8
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 5.5e-38 162.9 122 59.0
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.2e-38 162.5 270 40.4
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.2e-38 162.5 183 47.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 9.3e-38 162.2 122 59.8
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.3e-38 162.2 122 59.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.6e-37 161.4 122 59.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 6.1e-37 159.5 122 59.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.1e-37 159.5 122 58.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.0e-36 158.7 122 59.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.0e-36 158.7 122 58.2
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.3e-36 158.3 122 59.8
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.3e-36 158.3 268 38.4
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-36 157.9 127 56.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-36 157.9 127 56.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.8e-36 157.9 122 58.2
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.8e-36 157.9 122 59.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.8e-36 157.9 442 35.7
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 58.2
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 59.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 59.0
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.3e-36 157.5 285 37.2
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.3e-36 157.5 268 37.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 57.4
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.9e-36 156.8 122 59.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 5.1e-36 156.4 272 39.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 5.1e-36 156.4 267 37.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 5.1e-36 156.4 267 37.5
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 5.1e-36 156.4 267 34.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 6.7e-36 156.0 122 57.4
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.7e-36 156.0 141 51.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.7e-36 155.6 122 57.4
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 8.7e-36 155.6 198 42.4
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-35 155.2 122 56.6
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.1e-35 155.2 122 56.6
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.5e-35 154.8 122 56.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.5e-35 154.8 128 54.7
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.5e-35 154.8 122 56.6
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.9e-35 154.5 128 55.5
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.5e-35 154.1 130 53.1
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.5e-35 154.1 182 44.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.3e-35 153.7 122 58.2
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.3e-35 153.7 127 55.1
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.7e-35 152.9 150 51.3
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.3e-34 151.8 127 54.3
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-34 151.8 128 53.9
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.6e-34 151.4 276 37.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.2e-34 151.0 273 37.0
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 3.7e-34 150.2 122 54.9
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.8e-34 149.8 274 38.3
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 6.3e-34 149.4 270 36.7
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.1e-33 148.7 122 55.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.1e-33 148.7 277 37.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.4e-33 148.3 143 50.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.4e-33 148.3 122 54.1
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.4e-33 148.3 122 54.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.4e-33 147.5 269 38.3
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.1e-33 147.1 265 36.2
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.1e-33 146.7 268 37.7
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.1e-33 146.7 279 36.9
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.7e-31 141.4 285 35.4
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 6.5e-31 139.4 298 34.6
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 1.2e-29 135.2 78 83.3
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.6e-29 134.8 266 35.7
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 3.1e-25 120.6 129 50.4
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.2e-21 108.6 372 44.1
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-18 98.6 230 29.6
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-18 98.6 230 29.6
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-07 62.4 55 54.5
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.5e-06 56.6 69 43.5


User provided reference genes

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