Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 2.9e-249 864.8 435 100.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 4.6e-162 575.1 382 81.4
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.4e-150 537.0 382 77.0
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.5e-128 463.8 303 81.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 1.6e-127 460.3 382 65.4
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 2.8e-127 459.5 386 65.3
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 8.2e-127 458.0 382 66.8
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.4e-126 457.2 384 66.7
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.4e-126 456.4 384 64.8
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.3e-124 450.7 382 63.4
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-124 450.3 383 65.0
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 3.8e-124 449.1 383 64.8
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.1e-123 447.6 384 65.4
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.4e-123 447.2 383 64.0
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 3.2e-123 446.0 382 64.7
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 4.2e-123 445.7 382 64.7
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 4.2e-123 445.7 382 64.7
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.1e-123 444.9 382 64.7
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 9.3e-123 444.5 384 64.8
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.2e-122 444.1 383 64.5
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.6e-122 443.7 382 64.4
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 2.1e-122 443.4 388 62.1
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.1e-122 443.4 383 65.3
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 4.6e-122 442.2 383 65.0
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 4.6e-122 442.2 392 65.1
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 6.1e-122 441.8 384 63.3
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.3e-121 440.7 383 63.4
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 2.3e-121 439.9 383 64.5
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.0e-121 439.5 385 64.2
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 5.1e-121 438.7 393 62.1
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.7e-121 438.3 388 62.9
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 8.7e-121 438.0 387 62.0
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 8.7e-121 438.0 383 62.4
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.1e-120 437.6 388 62.9
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.5e-120 437.2 383 61.9
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.9e-120 436.8 388 62.6
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 4.3e-120 435.6 375 64.3
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 9.7e-120 434.5 382 62.8
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.2e-119 433.3 383 62.9
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 2.8e-119 433.0 382 63.6
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 6.3e-119 431.8 384 61.7
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.3e-119 431.8 419 59.4
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 8.2e-119 431.4 389 60.9
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 1.4e-118 430.6 382 60.7
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 1.8e-118 430.3 382 63.1
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 3.1e-118 429.5 382 62.3
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 6.9e-118 428.3 389 61.7
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 1.5e-117 427.2 386 63.0
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 2.6e-117 426.4 382 62.8
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.5e-117 425.6 382 62.0
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 4.5e-117 425.6 382 60.2
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 4.5e-117 425.6 382 60.2
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.7e-116 423.7 397 59.9
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 5.0e-116 422.2 382 61.0
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.4e-115 420.6 382 62.0
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 7.2e-115 418.3 383 61.1
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 2.1e-114 416.8 383 61.6
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.1e-114 416.8 382 61.3
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 2.7e-114 416.4 385 62.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 2.7e-114 416.4 382 61.0
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 3.6e-114 416.0 382 59.7
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 6.1e-114 415.2 389 59.6
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 6.1e-114 415.2 382 61.5
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.0e-113 414.5 387 59.9
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.0e-113 414.5 382 60.7
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.4e-113 414.1 384 60.7
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.4e-113 414.1 384 61.5
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.8e-113 413.7 386 60.1
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 2.3e-113 413.3 383 62.4
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 3.9e-113 412.5 382 61.0
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 5.1e-113 412.1 383 59.5
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 5.1e-113 412.1 389 59.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 6.7e-113 411.8 388 59.3
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.5e-112 410.6 383 59.5
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 3.3e-112 409.5 385 59.5
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 3.3e-112 409.5 385 59.5
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 4.3e-112 409.1 384 59.4
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 4.3e-112 409.1 382 60.2
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 5.7e-112 408.7 382 60.2
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.3e-111 407.5 384 59.6
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.2e-111 406.8 382 59.9
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 4.8e-111 405.6 381 60.1
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 8.2e-111 404.8 384 59.1
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.4e-110 403.3 382 58.9
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 6.9e-110 401.7 389 58.1
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 6.9e-110 401.7 378 59.8
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.0e-109 400.2 411 56.4
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.4e-109 399.4 381 58.5
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 4.5e-109 399.1 395 58.5
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 5.9e-109 398.7 381 57.7
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.0e-108 397.9 425 55.5
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 5.0e-108 395.6 379 59.4
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 8.5e-108 394.8 377 58.9
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 1.1e-107 394.4 382 57.6
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.9e-107 393.7 414 54.3
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 4.2e-107 392.5 383 58.5
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.6e-106 390.6 396 56.1
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.8e-105 387.1 387 57.9
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.8e-105 387.1 389 55.5
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.0e-105 386.3 389 55.5
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 5.1e-105 385.6 352 59.7
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.5e-104 384.0 395 55.9
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.5e-104 384.0 389 55.3
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 2.6e-104 383.3 396 55.8
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 4.4e-104 382.5 376 56.6
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 3.7e-103 379.4 458 50.0
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 8.2e-103 378.3 398 55.5
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 1.1e-102 377.9 398 55.5
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.3e-102 375.6 382 55.8
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.0e-100 371.3 330 62.4
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 1.1e-99 367.9 253 75.1
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.5e-96 357.5 247 75.3
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.0e-96 357.1 253 73.1
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.1e-94 351.3 403 53.8
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 1.1e-91 341.3 398 49.5
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 2.5e-91 340.1 258 70.9
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.2e-88 331.3 394 50.0
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.1e-86 324.7 373 51.5
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.0e-84 318.2 293 60.8
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.3e-84 317.8 359 51.5
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 2.5e-83 313.5 360 50.8
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.4e-78 297.7 385 49.1
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.3e-75 286.6 219 69.4
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.3e-71 274.6 396 45.2
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 3.5e-69 266.5 186 76.3
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 7.3e-67 258.8 300 51.7
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 2.8e-66 256.9 361 44.6
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 2.6e-64 250.4 410 42.0
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 1.7e-60 237.7 196 69.4
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.6e-56 223.8 373 42.4
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.6e-48 197.2 165 61.2
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 4.3e-43 179.9 146 65.8
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 6.2e-42 176.0 135 68.1
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 8.1e-42 175.6 542 30.1
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 1.1e-41 175.3 238 45.8
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 4.2e-38 163.3 127 67.7
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 1.2e-37 161.8 118 70.3
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 3.0e-36 157.1 119 73.1
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 1.1e-35 155.2 196 47.4
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 6.4e-31 139.4 143 55.2
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 2.2e-23 114.4 153 47.7
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 6.4e-23 112.8 220 37.7
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.2e-22 110.5 114 51.8
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 6.7e-20 102.8 85 68.2
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 2.5e-19 100.9 95 55.8
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 2.5e-19 100.9 95 55.8
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 2.5e-19 100.9 95 55.8
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 2.5e-19 100.9 95 55.8
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 2.8e-18 97.4 72 62.5
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 6.2e-18 96.3 110 45.5
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 8.1e-18 95.9 128 47.7
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.8e-17 94.7 69 68.1
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.0e-17 93.6 71 64.8
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 4.5e-16 90.1 68 61.8
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 7.6e-16 89.4 73 65.8
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.2e-14 83.6 80 66.2
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.7e-13 80.9 76 63.2
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 1.0e-12 79.0 84 51.2
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.9e-11 74.7 87 49.4
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 3.3e-11 73.9 74 54.1
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 4.3e-11 73.6 80 50.0
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 5.7e-11 73.2 97 47.4
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 6.3e-10 69.7 297 25.9
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 8.2e-10 69.3 39 74.4
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 1.1e-09 68.9 49 63.3
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 2.4e-09 67.8 110 42.7
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.5e-08 65.1 35 82.9
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 2.2e-07 61.2 34 79.4


User provided reference genes

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